Diospyros lotus (date-plum): 127794709
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Entry
127794709 CDS
T10632
Name
(RefSeq) uncharacterized protein LOC127794709 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127794709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127794709
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127794709
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
127794709
Messenger RNA biogenesis [BR:
dlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
127794709
DNA repair and recombination proteins [BR:
dlt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
127794709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
DUF659
Motif
Other DBs
NCBI-GeneID:
127794709
NCBI-ProteinID:
XP_052181916
LinkDB
All DBs
Position
1:33824729..33842956
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AA seq
911 aa
AA seq
DB search
MEVALKKYFGYSAFRRCQKEVIEKILQGRDCLVIMATGSGKSLCYQVPPLIARKTAIVIS
PLLSLMQDQVMALRQRGIKAEHLSSAQTDSSVQRNAQSGQFDILYMTPEKACSISSSFWL
NLLNNGICLLAVDEAHCISEWGHDFRVEYKQLDKLRNILTDVPFVGLTATATEKVQSDIM
NSLKMRDPYIAVGSFDRNNLFYGVKYFNGSSFVDELVGEVSKCVATAGSTIIYCTTVRDT
EQIFKSLLKEGIKAGIYHGQMNNKARVESHSSFVRDELHVMVATIAFGMGIDKPNIRYVI
HYGCPKSLESYYQESGRCGRDGIASTCWLYYTRADFAKADFYCREAKSENQRTAIMESFM
AARSYCMLTTCRRKYLLDYFGEKYASDNCGTCDNCTTSQKKSDMCREAFLLMACIRSCRG
NWGLNMPVDILRGSRSKKILDAQFDKLPFHGLGKELSANWWKALGYQLISHGYLSETVKD
VYNFVCVSPKGLQFLSSSKPDHQPALVLPVTSEMSSKDENRNRVGAVGVFNGFTPLEYEG
LSEAEVQLYKMLLDERMKLARAIRTAPYAICGDQTLKKIALARPSTKARLANIDGVNQHL
LSKYGDHFVQNVQSLSRDLKLSLDGDASAQNTITKPFHTIPNSDRKLTPSKIETWRMWQE
DGVSVKKIANFPGRSAPIKEETVHQYILDAAQEGRPVDWTRFSQEIGLTSEIFANIQGAI
SKVGSRDRLKPIKNELPEEISYMHIKACLKMQDLGISADVIAPGQHLCQAEEHSIETSDL
LAKSGCPCHMEEEPCESNIPVGTMVGEYSSDKSKEADSNFPANNTSPKQPTVSIDDLPSP
NKRQKVNKSLLALEATESSLLNWLKNYGDGVCLSDILEHFNGSTGELVLELLSCLEGEFL
IFKKNGLYRLM
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgcccttaagaaatactttgggtattcggcatttcggcgatgtcagaaagag
gtcattgagaaaattttacagggaagagattgcctggttatcatggccactggaagtgga
aaatctctgtgctatcaggtccctccactgattgccagaaaaactgctattgtcataagc
cctcttttgtccttgatgcaagatcaggtaatggctttgcgacaacgaggcattaaagcc
gagcatctctctagtgctcaaactgactctagtgtgcagcgcaatgcccagagtggtcaa
tttgatattctgtacatgactcctgaaaaggcatgctctatatcttccagcttttggtta
aatttgctaaacaatggaatatgcctattggctgttgatgaagcacattgcatttcagag
tggggccatgatttcagggtggaatacaagcagctagacaagttgcgcaatattcttacg
gatgttccatttgttggcttaacagcaactgctactgaaaaggttcagagtgacatcatg
aattccttgaagatgagagacccttacattgctgttggttcatttgatcgcaacaatctt
ttctatggagtcaaatatttcaatggttcttcattcgtggatgagcttgttggagaagtc
tctaaatgtgtggccactgctggttcaactatcatatactgcacaactgttagagatact
gaacagattttcaagtcacttctcaaggaaggaatcaaggctggaatctatcatggccaa
atgaataataaagctcgtgtggagtcccacagctcatttgtgagagatgaattgcatgtt
atggtagcaactattgcttttggcatgggcattgataaaccaaacataaggtatgtgata
cactatggctgcccaaaaagtttagagtcctattaccaggaaagcggacgatgtggtcga
gatggtatagcttctacatgctggctttattatacaagagccgactttgcaaaagctgat
ttctactgcagagaagcaaaatcggaaaatcaaagaacagctattatggagtcgtttatg
gctgcacgaagttattgcatgctgacaacttgtagaagaaagtatttgctggactatttt
ggggaaaaatatgcatctgataattgtggaacttgtgataattgtaccacctcacagaag
aagagcgacatgtgtagagaagcatttcttctaatggcctgtattaggtcatgtaggggt
aattggggcctcaatatgcctgtagacattctgcgtggatctcggtctaagaaaattctc
gatgctcagtttgacaagctcccatttcatgggcttgggaaagagttgtcagcaaattgg
tggaaagcactaggttaccaattaatttctcacggttatttgtctgagactgttaaagat
gtgtataactttgtgtgtgtcagtcctaaaggattgcagtttctgagttcatcaaaacct
gatcatcaacctgccttagttctgccagtgaccagtgaaatgtccagcaaagatgaaaac
agaaacagagtaggtgcagttggagttttcaatggtttcactcctctggaatatgagggt
ctgtcagaggctgaagtacagctatacaaaatgcttttagatgagagaatgaagcttgca
agagccatcagaactgctccgtatgcgatatgtggtgatcaaacgttgaaaaagatagca
ctggcaaggccctctactaaagcgagattagcaaacattgatggtgtcaaccagcacctt
ctgtctaagtacggagatcattttgttcaaaatgtccaatctctatcacgagatttaaag
ctttcactggatggggatgcaagtgcacaaaatactattacgaaacccttccatacaata
ccaaactccgacagaaaactaacaccatccaaaattgagacttggagaatgtggcaagag
gatggtgtatcagtaaagaaaattgctaatttccctggcagatcagccccaataaaagag
gaaaccgttcaccaatatatccttgatgctgctcaagagggacgtccagttgattggacc
agattcagccaggagattggattaacaagtgagatttttgcaaatatacagggagctatc
tcaaaagttggttcaagagacagattgaagcctattaaaaatgagttaccagaagaaata
agttatatgcatatcaaggcatgtttgaagatgcaggatttggggatatcagcagatgta
attgcccctggccaacacctttgccaagcagaggagcattctattgagacatcagattta
cttgcaaaatctggctgtccatgccatatggaagaagagccttgtgaatctaatatacct
gtcgggacgatggttggtgaatattcttcagataaaagcaaagaggcagattctaatttc
ccagcgaataacacaagcccaaaacaacccacagtctcaattgatgatctgccttcccct
aacaaacgccaaaaagttaacaagagtttacttgcattggaggcaacggagagctcactg
ttaaactggcttaagaattatggtgatggggtttgcctatctgatattttggagcatttc
aatggttccacaggagagttggtgcttgaactactgagctgcctggagggtgagtttttg
atatttaagaagaatggcctgtatagactcatgtaa
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