Diospyros lotus (date-plum): 127795014
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Entry
127795014 CDS
T10632
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127795014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127795014
03009 Ribosome biogenesis [BR:
dlt03009
]
127795014
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127795014
Spliceosome [BR:
dlt03041
]
Complex A
U1 snRNP components
U1 related factors
127795014
Complex B
127795014
Ribosome biogenesis [BR:
dlt03009
]
Eukaryotic type
Pre-60S particles
Helicases
127795014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
127795014
NCBI-ProteinID:
XP_052182371
LinkDB
All DBs
Position
2:complement(44606345..44626074)
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AA seq
504 aa
AA seq
DB search
MSRYDSRSTDPGSYRDRRSDSGFGGGSSYSGARSSSGRRDYEGIESPRKLDLDGLPPFEK
NFYVESPSVAAMSESEVEEYRRRREITIEGRDVPKPIKTFRDAGFPDYVLQEIVKAGFSE
PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPT
RELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHH
TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYN
AYKVIIGSPDLKANHAIRQHVEIVSENHKYNKLVKLLEDIMDGSRILIFMDTKKGCDQTT
RQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDF
PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLMRILEEAGQKVSPELAAMGRGA
PPPPGHGGFRDRGRGYSGGGRPWN
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatgacagccgctccaccgatcccggctcgtaccgcgaccggagaagcgat
tcagggttcggcgggggttcgtcttacagcggagctcgttcgtcgtcgggaaggagagat
tacgaggggattgagtcgcctcggaagttggatttggatggattgcctccattcgagaag
aatttctatgtggagtctccgtccgtggcagcgatgtcggaaagtgaggttgaggagtac
cggaggcggcgggagatcaccattgaaggtcgggacgtgccaaagccaatcaagactttc
cgtgatgccgggtttccagattatgtgctgcaagaaattgtaaaggctggcttttctgaa
cctacaccaattcaagctcagggatggccaatggctttaaagggtcgtgatctgatcggt
attgctgaaacaggttcaggcaagacacttgcctacctcttgcctgcaatcgtccatgtg
aatgctcagccaattttagctcctggagatggccccatcgtgctagttttagctccaaca
cgtgagcttgctgttcagatacagcaagaagctactaagtttggtgcatcatcaaggatt
aaaaatacctgcatatatggtggggttcctaagggtccccaagttcgtgatctccagaaa
ggtgttgaaattgttattgctacccctggaaggttgattgatatgatagaatctcatcat
acaaacttgcgaagggttacataccttgtgttggacgaagcagaccgaatgcttgacatg
ggatttgaacctcagattcgaaaaattgtttctcagattcggcctgatcgtcaaaccttg
tactggagtgctacatggcccaaggaggttgaacaacttgcaaggcaattcctttataat
gcctacaaagtcattataggttctccagatttgaaagctaatcatgcaattcgccagcat
gtggagattgtttctgagaaccataaatataacaaattggtgaagttgctggaggacatc
atggatggtagcaggattctgatcttcatggataccaaaaaaggatgtgaccagactact
cggcagcttcgtatggatggctggcctgctctctctatacatggagacaagagtcaagca
gagagggattgggttctctcagagttcaaagctggcaagagtcctataatgactgcaaca
gatgttgcagctcgtggtttagatgtgaaggatgtgaaatttgtcatcaactatgatttt
ccgggatccttggaggattatgttcaccggattggtcgtactggaagagctggggccaaa
ggaacagcatacactttttttacagctgcaaatgcgaggtttgcaaaagacctcatgaga
attctcgaggaagctggacagaaggtcagtcctgagctggcagcaatgggtcgtggtgca
ccccctcctccaggtcatgggggctttcgagatcgaggccgggggtacagtggtggtggt
cgcccgtggaactaa
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