Diospyros lotus (date-plum): 127795048
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Entry
127795048 CDS
T10632
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6 isoform X1
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127795048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127795048
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127795048
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127795048
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
127795048
NCBI-ProteinID:
XP_052182430
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Position
2:complement(13639735..13650701)
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AA seq
274 aa
AA seq
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MAVLSKSESVRIREVWDENLEDEFAMICDIVDDYRYIAMDTEFPGMVLRPLLNFKSSTDS
YYLAVKANVDLLKLIQLGLTFSDEDGNLPTCGTDKYCVWQFNFCEFNINEDVYANESIEL
LSHSGIDFKKNNEKGIDALRFSELLMSSGIVLNDNVCWVTFHSGYDFGYLLKLLTGQNLP
DTQVEFFNLINLYFPTIYDVKHLMKFCNNLHGGLNKLADQLGVKRIGICHQAGSDSLLTC
CSFMKLKENFFNGSPEKYAGVLYGLGVENGENTH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atggcggttttgtccaagagcgagtcggttcgcattagggaagtttgggatgagaacctt
gaagatgagtttgcgatgatatgtgatattgtggatgattaccgctacattgctatggac
actgagtttcctggcatggttctgcgccccttgctgaatttcaagagctccactgactct
tattatcttgccgtgaaggccaatgttgatcttctgaagttgattcagttaggtcttaca
ttttctgacgaggatgggaatcttcccacctgtggaactgataagtactgtgtttggcaa
ttcaacttttgtgaattcaacatcaatgaggatgtttatgccaatgagtcgattgagctt
ttaagccatagtgggattgattttaagaagaacaatgagaagggtattgatgctctgcgg
ttcagtgagctcctgatgtcttcggggatcgtgctgaatgataatgtgtgttgggttacc
tttcacagtggttatgattttggttacttgctgaagctgcttactggccaaaatctgcct
gacacacaggtggaattcttcaatctgataaacttgtattttccaaccatctatgatgtc
aagcatttgatgaagttctgcaacaatcttcatggtggattaaacaagcttgctgatcaa
ttgggtgtcaagaggattggcatctgtcatcaagctggttctgatagtttgcttacttgt
tgttctttcatgaagctgaaagaaaatttctttaatggctcacctgagaaatatgctggt
gtgttgtatggtcttggagttgagaatggagagaatactcattga
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