KEGG   Diospyros lotus (date-plum): 127795054
Entry
127795054         CDS       T10632                                 
Name
(RefSeq) sm-like protein LSM1B isoform X1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
dlt  Diospyros lotus (date-plum)
Pathway
dlt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dlt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127795054
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dlt03019]
    127795054
Messenger RNA biogenesis [BR:dlt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     127795054
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     127795054
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 127795054
NCBI-ProteinID: XP_052182444
LinkDB
Position
2:46139423..46146980
AA seq 176 aa
MSWAGPEDVYLSTSLANYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIRLGLYVIRGENVVLIGELDPEKEELPPHMTRVTAEEIRRTSLVGSAICTIPHCNVL
STGTKSRKGGYGSERFHEEADGVPRYGLVCVHDSDIQSCVFHQAQAKSSTNIIAVG
NT seq 531 nt   +upstreamnt  +downstreamnt
atgtcttgggcggggccagaagatgtctatctgtcaacttctctcgcaaactatctagac
aagaagcttcttgtattgctgagagatggtagaaaacttttgggaatacttcgttcattt
gatcaatttgcaaatgctgttcttgaaggtgcctgtgagcgagttattgtaggtgatctt
tattgtgacattcgattaggtttgtatgtaatccgtggggagaatgttgttttgatcggt
gagctggacccagagaaggaagaacttcccccacacatgactcgtgttactgcagaagag
ataagaaggacatcattggtcggttcagccatttgtacaattccacattgcaatgttctt
tcaacaggcacaaaaagcagaaagggaggctacggatctgaaaggttccatgaggaagcg
gatggagttcctcgatatggactagtttgtgtacatgattctgacattcagtcctgcgtt
tttcatcaggctcaggccaagtcatccacaaatattattgcggttggttga

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