Diospyros lotus (date-plum): 127795054
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Entry
127795054 CDS
T10632
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127795054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127795054
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127795054
mRNA degradation factors
5'-3' decay
Lsm complex
127795054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
127795054
NCBI-ProteinID:
XP_052182444
LinkDB
All DBs
Position
2:46139423..46146980
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AA seq
176 aa
AA seq
DB search
MSWAGPEDVYLSTSLANYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIRLGLYVIRGENVVLIGELDPEKEELPPHMTRVTAEEIRRTSLVGSAICTIPHCNVL
STGTKSRKGGYGSERFHEEADGVPRYGLVCVHDSDIQSCVFHQAQAKSSTNIIAVG
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcggggccagaagatgtctatctgtcaacttctctcgcaaactatctagac
aagaagcttcttgtattgctgagagatggtagaaaacttttgggaatacttcgttcattt
gatcaatttgcaaatgctgttcttgaaggtgcctgtgagcgagttattgtaggtgatctt
tattgtgacattcgattaggtttgtatgtaatccgtggggagaatgttgttttgatcggt
gagctggacccagagaaggaagaacttcccccacacatgactcgtgttactgcagaagag
ataagaaggacatcattggtcggttcagccatttgtacaattccacattgcaatgttctt
tcaacaggcacaaaaagcagaaagggaggctacggatctgaaaggttccatgaggaagcg
gatggagttcctcgatatggactagtttgtgtacatgattctgacattcagtcctgcgtt
tttcatcaggctcaggccaagtcatccacaaatattattgcggttggttga
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