Diospyros lotus (date-plum): 127795169
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Entry
127795169 CDS
T10632
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127795169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127795169
03009 Ribosome biogenesis [BR:
dlt03009
]
127795169
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127795169
Spliceosome [BR:
dlt03041
]
Complex A
U1 snRNP components
U1 related factors
127795169
Complex B
127795169
Ribosome biogenesis [BR:
dlt03009
]
Eukaryotic type
Pre-60S particles
Helicases
127795169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
127795169
NCBI-ProteinID:
XP_052182630
LinkDB
All DBs
Position
2:6953779..6962010
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AA seq
692 aa
AA seq
DB search
MNHLDQRYGDPTSYRQRRSDLTGPSPPGVMGGPGSSTYGRGGGGPAPYGGAPGPYSSGGK
GIEGAPGSVPGGGGGFNGYPFKPDVGRGFDIGQGGGGRGFSDRRGGGRGSGGRMGDRRGG
YAGAGGRGRGGGSGRGFDSGRGGGRAAGGRGDGGAFDAGRSWLPNLGGGRAGGGRSDTGR
GGGGGRGFSGGQGRGFDGGRGGGRGGRYGGSRGDLDNIALPKQDFGNLVPFEKNFYIESP
SVSSKSEQEVMLYRARKEITVEGHDVPRPIQMFEEANFPDYCLEVMARLGFVEPTPIQSQ
GWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLVRGEGPIVLVLAPTRELAVQI
QEETLKFGSRASIRSTCIYGGAPKGPQIRDLQRGVEIIIATPGRLIDMLETQHTNLRRVT
YLVLDEADRMLDMGFEPQIRKIIAQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG
SLDLKANQSINQVVEVVTEVEKYNRLIKLLSEVMNGSRILIFTETKKGCDQITRQLRIDG
WPALSIHGDKNQSERDWVLAEFKSGRSPIMIATDVAARGLDVKDIKCVINYDFPSSLEDY
VHRIGRTGRAGARGTAFTFFTHANAKYARDLIKILQEAGQIAPPALLALARSSGSHLGAS
GGNFRSRGQGGFGNRSLISGSNTIPIGSRRPW
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatctcgatcaaagatatggcgaccctacttcctatcgccagcgtcgaagtgac
ctgacggggccctcgccgccgggggttatgggtgggccagggtcctccacctacggccgc
ggaggcggcggccctgctccttatgggggtgctccggggccttactcttctggtggaaaa
gggattgaaggggctccgggttctgtaccggggggtggtggtggtttcaacggatacccg
tttaagcctgatgttggcaggggatttgacattggccaaggtgggggtggaaggggattt
agtgataggagaggtggagggaggggaagtggtggtagaatgggggataggagaggaggt
tatgcaggtgctggtggaagggggcgaggtggtggtagtggtaggggatttgattctggg
cgtgggggaggtagagctgctggtggccgtggggatggtggggcttttgatgcaggaagg
agttggttgccaaatttgggtggaggcagggctggtggtggtcgttctgatactggtcga
ggtggtggtggtggaaggggcttcagtggggggcaggggagggggtttgatggaggtcgt
ggcggtggcagaggtggtagatatggagggtctagaggggatttggataatattgctctt
ccaaagcaagattttggtaatttggtcccttttgagaagaacttctacattgagagccct
tctgtgagctcaaagtctgagcaagaagttatgctgtaccgtgccagaaaagagataact
gttgaaggccatgatgttccaaggccaatacaaatgtttgaggaggcaaatttccctgac
tattgccttgaggttatggccagattgggttttgttgagccaacaccaattcagtctcaa
ggatggccaatggccttaaaaggaagagatttgattggcattgctgagacaggttctgga
aagactttggcatatctgctacctgctttggttcatgttagtgctcagcctcgattggta
cggggtgaaggtcctatcgtcctggtattagcacctactagagaattggctgttcaaatt
caggaagaaactttaaaatttgggtcccgtgcaagtattagaagcacctgcatctatggt
ggtgcaccaaaaggccctcagattcgtgaccttcaaagaggtgttgaaattatcattgct
acaccaggtagactgatagatatgttagaaactcagcacacaaacttgagaagagtgact
taccttgttttggatgaggctgatcgaatgctggacatgggttttgagcctcagatcagg
aaaattatagcccagattcgaccagataggcagacattgtattggagtgctacatggcca
agagaggtggaaactttggcaagacagttcttgcgcaatccgtataaggttattatcggc
tctctagatctcaaagcaaatcagtctatcaaccaagttgttgaagttgttacagaggtg
gagaagtacaacaggctgatcaaactgctcagcgaagtgatgaatggaagtcgaatacta
attttcactgagaccaaaaaaggatgtgaccaaatcactaggcagctgagaattgatgga
tggccagctttgtccatccacggtgataaaaaccagtctgaaagagattgggttttggct
gaatttaaaagtggcagaagtcctataatgattgctactgatgttgctgcacgtggtctt
gatgtgaaggatatcaaatgtgtgatcaactatgattttccttcaagtctggaggactat
gtccacaggattgggcgcactggtcgtgcaggagccaggggaactgcttttacgtttttc
acacatgcaaatgcgaagtatgctagggatctcattaaaatcctgcaagaagcggggcaa
attgcccctcctgcattgttggccttggctcgttcgagtggttcacatctcggagcttct
ggtggcaacttccggtccagaggacaaggtggtttcggaaacaggtctctgatttcagga
tccaacaccattcctattggttccaggaggccttggtag
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