Diospyros lotus (date-plum): 127795228
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Entry
127795228 CDS
T10632
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03020
RNA polymerase
dlt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127795228
09124 Replication and repair
03420 Nucleotide excision repair
127795228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127795228
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127795228
Enzymes [BR:
dlt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127795228
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
127795228
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
127795228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
127795228
NCBI-ProteinID:
XP_052182730
LinkDB
All DBs
Position
2:20314604..20322268
Genome browser
AA seq
1190 aa
AA seq
DB search
MDLEEEYDPSYNEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDES
ADIEIRPESQHNPGHQSDSAETIYRISFGQIYLSKPMMTESDGETATLFPKAARLRNLTY
SAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSNYCTLYENSEKDLTELGE
CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM
FVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQM
MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC
ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVKA
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST
LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA
YPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNT
EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRETPEEGGWHDLVT
KGFIEYIDTEEEETTMISMTINDLITARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFP
DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
GINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR
ANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEDAQGPAARYTRRDHSTSL
RHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHK
CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFEC
RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEIKPAKDQKKKAT
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggacttggaagaagagtatgatccatcctacaacgaagatgaggaagaggagatcact
caggaagacgcgtgggctgtaatcagtgcctactttgaagagaagggactggtgcggcag
cagctcgattccttcgacgagttcatccagaatacgatgcaggaaatcgtcgacgagtca
gccgacatcgagattcgacccgagtcccagcacaaccccggccaccagtccgattcggcc
gagaccatctataggatcagttttggtcagatatatttgagtaagcccatgatgacggag
tcagatggagagactgcaactttgtttcccaaggctgcgaggttgaggaatctgacatac
tcagcacccttgtatgtggatgtcacaaagagggttataaagaagggacatgatggcgaa
gaggttactgaaactcaggacttcactaaagtcttcattgggaaggttcccataatgctc
cggtccaattactgtaccttatatgagaattcagagaaggatttgactgaacttggagag
tgcccttatgatcaaggagggtacttcatcatcaatggcagtgaaaaggttctcattgct
caagagaagatgagcacgaatcatgtctatgtgtttaagaagaggcaaccaaataagtat
gcctatgtagcagaagttcggtcaatggcagagtcgcaaaaccggccgcccagtaccatg
tttgtgcggatgctctctcgagctagtgccaaagggggctcttctggccagtatattcgt
gccacacttccatatattcgaacagagatacctattattattgtgttccgtgctcttggc
tttgttgctgataaagacatattagaacatatatgttatgatttttctgatactcagatg
atggagttgctgcgaccctccttggaagaagcatttgtcatacaaaatcaacaggttgca
ctagattacattgggaaacgaggggccacagttggtgtcacaagggaaaagagaattaaa
tatgccaaagagatccttcaaaaggaaatgcttcctcatgttggggttggagaatattgt
gagacgaaaaaagcttactattttggatacatcatccacagacttctgctgtgtgcactt
ggacggagggcagaggatgatagagatcactatggcaataagagactggatcttgctggc
cctttgctcggtggactgtttcgaatgctattcagaaagctaaccagagatgtcaaagct
tatgtccaaaagtgtgttgataatgggaaagacgttaatcttcaatttgcgatcaaggca
aaaacaattaccagcggcctcaaatattcacttgcaactgggaactggggacaggcaaat
gcagctggtacaagagctggtgtttcacaggtgttgaatcggttgacttatgcctccact
ttgtcgcacttacgaagattaaattcaccaatagggcgtgaagggaaattggcgaaacca
cgtcaattgcacaattctcagtggggcatgatgtgtcctgctgaaacaccggaaggacaa
gcatgtgggctggtaaagaatcttgcattgatggtgtatataacagttggatcagctgca
tatcccattttggaattcctggaagaatggggtaccgagaattttgaggaaatttctcct
gcggtgattccccaagctacaaaaatatttgttaatggttgctgggtcggcattcatcgt
gatcctgacatgttagtgaagacactaagacgactgaggcgacgggttgacgttaatact
gaagtgggagttgttagagatatccgcttgaaagaactgcgaatctatactgattatggg
cgttgcagtcgtcctttatttattgtggagaaacaacgacttctaataaagaagaaagac
attcaggcattgcaacaaagggaaacccccgaagaaggtggctggcatgaccttgttaca
aagggattcatagaatacattgatacagaagaagaggagactaccatgatttccatgact
ataaatgatctcatcactgcaaggctcaatccagaggaggcctattcagatacttacacc
cattgtgaaatccacccatcattgattttaggtgtatgtgcgtcaattattccattccct
gaccataaccagtctccgcgtaatacatatcaatctgcaatgggcaagcaggccatgggt
atatatgtcaccaactaccagttcagaatggataccttggcctatgtgctctactatcca
cagaagccacttgttactactagagccatggagcaccttcatttcaggcagcttcctgcc
ggaattaatgcaatcgttgccattgcttgctattctgggtataaccaagaagactctgtc
atcatgaaccaatcgtcagtagaccgagggttttttagatcacttttcttccgttcttac
agggatgaggagaagaagatgggaacacttgttaaagaggattttggtcgtccagataga
gcgaacaccatggggatgcggcatggttcgtatgataaattagatgatgatggtcttgca
cctcctgggacaagagtttcaggggaagatgtgataattgggaagacaactccaatctct
caggaggatgcgcagggtccagctgcacgttacacacgccgcgatcatagcacaagcttg
cgccacagtgaaaccgggatagtagatcaggttttactaacaacaaatgcggatgggttg
agatttgtgaaagtaagggtcagatcagtgaggatacctcagattggggacaagtttagc
agtaggcatgggcagaaaggaacagttggaatgacatacacacaagaagacatgccgtgg
actgtggaaggaatcaccccagatattattgtgaatccccatgctattccttcccggatg
acaattgggcagcttattgagtgtatcatgggtaaggttgctgctcacgtgggaaaggaa
ggggatgcgactccttttacagatgtcacagtcgacaacatcagcaaagctcttcataaa
tgtgggtatcaaatgcgtgggtttgagaccatgtataatggtcacacagggcgccggtta
acagctatgatattccttggtcccacatactatcagagactgaagcatatggtcgatgac
aagatccattcgcgtggacgcggtcctgtacagatccttacaagacagcccgccgaggga
cgttctcgtgatggtggactccgatttggggagatggaaagggattgcatgattgcacat
ggcgctgctcactttctcaaagaaaggttgttcgaccaaagtgatgcgtatagaattcat
gtttgtgagcgttgtgggttgatagccattgcaaacctcaagaagaattctttcgagtgc
agaggttgcaagaacaaaactgatattgttcaggttcacattccatatgcctgtaagttg
cttttccaagagctaatgtctatggctatagcgccaagaatgttaacaaaggagattaaa
ccagccaaggaccagaagaagaaagcaacttga
DBGET
integrated database retrieval system
