Diospyros lotus (date-plum): 127795231
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Entry
127795231 CDS
T10632
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03022
Basal transcription factors
dlt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127795231
09124 Replication and repair
03420 Nucleotide excision repair
127795231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127795231
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127795231
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127795231
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127795231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
127795231
NCBI-ProteinID:
XP_052182732
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All DBs
Position
2:complement(13460173..13471465)
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AA seq
452 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAMKLDKLYDNAFICEAILRSLPPLAKKYVLQLLYIDVPVSA
KSMEEWVLADGFSKHKVAIDRLIQLRILTETVDRKKETTYRLNQTFQINLRKHIVHGGVL
PREPMPANVTVRLPRLEDLEAYAAEQWECFLLHLISSSQAERTTNFSSSMMKIFQRGLLS
QRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHVTGQ
AYNINTLTDIQKSVIKDLADLGLVKLQQGRKESWFIPTKLATNLSISLSDSSSRKQGFIV
VETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVSGITKESLYTAFENGIMAEQIISFL
QQNAHPRVAERIPTVPENVTDQMRLWESDMNRVEMTPAHLYDEFPSREVFEAACDFAREY
GGCLWEDPKKMRLVVKAEMHMHMREFLRSQRQ
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaagtgaagatcatcgcgaagaacttcatggacatggtggcctcgctgcctgcc
atgaagctcgacaagctctacgacaacgcctttatttgtgaggccattctcagatctttg
ccaccgttagccaagaaatatgtgctgcaattgttgtacattgatgtgcctgtatcagcc
aagtcgatggaagagtgggtgcttgctgatggattctctaaacataaagtagccattgat
agattgattcagttgagaatattaactgaaactgttgacaggaaaaaggaaactacttat
agattaaaccaaacatttcagattaaccttcgaaagcatatagtacatggtggagtttta
ccaagggaacctatgcctgccaatgtcacagtgagactcccaaggttggaggatttagag
gcttatgctgctgaacagtgggagtgtttcttgctgcatcttataagctccagccaagct
gaaaggacgacaaacttcagctcttctatgatgaaaatattccagcgaggccttctgagt
caaagggacaaagaagctccaaaattaactgaaagtggtttccaattcctgttgatggat
acgaatgcacaactttggtacatcatcagggaatatatttcaaattctgaggaacgtggc
ttggattcagcagatttgatttcatttctgcttgagcttagtttccatgttacaggccag
gcatataacatcaatacattgactgacattcagaagagtgttataaaagacctagcagac
ttggggttggtcaagctccagcagggtaggaaagaaagttggtttattcctactaagtta
gctaccaatctgtcaattagcttatcggattcatcatcacggaaacagggctttattgtt
gtcgaaacaaactttcgcatgtatgcatactcatcatctaaactacattgcgagattttg
cgcctcttcgcaagggtagaatatcagcttccaaatcttattgtttctggaattacaaaa
gaaagcttgtatactgcttttgaaaatggcattatggcagagcagataatttcttttctt
cagcagaatgcacatcctcgagttgcagagaggattcccaccgtaccagaaaatgtcact
gatcagatgaggttgtgggaatcagatatgaatagagttgagatgacaccagctcatctc
tacgatgagttcccctctagggaagttttcgaggccgcgtgtgattttgctcgggaatat
ggaggttgtttgtgggaagacccgaaaaagatgcgcctggtagtgaaggcagagatgcac
atgcacatgcgagagtttctgcgcagtcagaggcagtag
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