Diospyros lotus (date-plum): 127796574
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Entry
127796574 CDS
T10632
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127796574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127796574
04121 Ubiquitin system [BR:
dlt04121
]
127796574
03036 Chromosome and associated proteins [BR:
dlt03036
]
127796574
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127796574
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
127796574
Ubiquitin system [BR:
dlt04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
127796574
Chromosome and associated proteins [BR:
dlt03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
127796574
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
127796574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-RING_6
zf-RING_UBOX
zf-C3HC4_2
zf-HC5HC2H_2
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_4
zf-RING_2
zf-RING_5
zf-RING_10
RTT107_BRCT_5
Prok-RING_4
PHD_NSD
PHDvar_NSD
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
127796574
NCBI-ProteinID:
XP_052184724
LinkDB
All DBs
Position
3:18066367..18073862
Genome browser
AA seq
739 aa
AA seq
DB search
MSEPSKLLNPWVLHHQKLGLELKCPLCLNLLNRPMLLPCNHIFCDLCVPRSTQFGSDCPV
CKQQFVTRDVRPAPYMDSLVTIYRSLDATFSATLFQPLTPDCGRVSQQSPVQGDNELKES
DETPQEGNSGNGLCKFLLGTSKRVRASLDHPVTEGNTLTGKSDKCTLQFSRKSEKLKMCD
VDGMVFHGKNETTTLENPGSTRAAEYKDPGLDVIEFSQMLHPSPVSAPSLGDKHMDDERS
DQGSGNECAERHPGKCLVEMNSDNPGAGMKERTLAEAGEYHAKDVKRQKKLNCGLIDMDV
TNNSCSQPKFLNFGRAATSELMSKAEEFSRENAFMVSDACEASRSICAFCQSSSVTDRTG
PMLHYVNGREVVGDGATNSNAIHAHKICIEWTPQAYFVGETVKNLKTEVARAAKLKCTSC
GLRGAALGCFVKSCRKSYHVPCAVEVLGCRWNFDDFLMLCPSHSSVKFPSEKSKFGKCTI
EKQHFVPTKIESRMPKQSNLWRASPDGAKEWVFCGSALCAEEKHLLIKFASICGATVTKF
WRPNVTHVIAATDEKGACSRTLKVLKAILHGTWILKTEWIKACMEAMHPVDEEPYEVSLD
NHGCCDGPKAGRLRALENVPKLFDGLNFYFMGDFIPAYREDLLDLVITAGGGVVESKQQL
ASLAHAATFVVYNNDPMQVVQGCIFEEDGSSSSSSSSALQRLEAAAKELSDELGSQPQVI
AHTWLLESIAASKLQPFGK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagccttccaagcttctcaatccatgggtcctccatcatcagaaactcggtctc
gagctcaagtgccctctctgcttgaacctgcttaatcgcccgatgctgcttccctgcaat
cacatcttctgcgatttatgcgtgccaagatcaacccagtttggatccgactgccccgtc
tgtaaacaacagttcgttactcgagatgtacggccagctccttatatggatagtctggta
accatttatagaagtttggatgccactttcagtgctactctctttcagcctctcacacct
gattgtggaagagtgtctcagcaatcccctgtacaaggtgacaatgaattaaaggagtca
gatgaaacacctcaggagggaaactctggcaatgggctatgcaaatttttactaggaaca
agtaaacgagttcgggcttcacttgaccatcctgttacagaaggaaatacactgactgga
aaatctgacaaatgcactctgcaattttctaggaagtcagaaaagcttaagatgtgtgat
gtggatggaatggttttccatggtaaaaatgaaacgactaccctagaaaatcctggttca
acaagggctgcagaatacaaagaccctggtctagatgtgatagaatttagtcaaatgtta
catccatcaccagtaagcgctccttctcttggtgacaaacacatggatgatgaaagaagt
gatcaaggcagtggcaatgaatgtgctgaaaggcatccaggcaagtgcttagttgagatg
aactctgataatcctggtgctggaatgaaggagagaactttggctgaagctggagaatat
catgccaaggatgtcaaaagacaaaagaaactgaactgtggattgattgatatggacgtg
acaaacaacagctgcagtcaaccaaaatttcttaattttggacgtgcagcaacttcagaa
ttgatgtcaaaagctgaggaattctctagggaaaatgcatttatggtttcagatgcatgt
gaggcaagtagaagtatttgtgccttctgccaatcctctagtgttacagatagaactggg
cctatgttgcattatgtcaatggaagggaggttgtgggagatggggcaacaaactccaat
gcaatacatgctcacaagatatgcattgaatggacacctcaagcttattttgttggtgaa
actgttaaaaatttgaaaacagaagttgcgagagctgcaaaactaaaatgcaccagctgt
gggctaagaggagctgctcttggctgctttgtgaaatcatgccgcaaaagttatcacgtc
ccatgtgctgttgaagttcttggttgcagatggaacttcgatgactttctaatgctctgc
ccaagtcattcttctgtcaagtttccaagtgagaagtccaaatttgggaagtgcaccatt
gaaaagcagcattttgtgccaactaaaattgaatccagaatgcctaagcagtccaacttg
tggagagcctctcctgatggagcaaaagaatgggttttttgtggctctgccctgtgtgct
gaagaaaagcatcttttgatcaaatttgcaagcatttgcggtgcaactgtaaccaagttt
tggaggccaaatgttacccatgtcattgctgccacagatgagaagggtgcatgcagcagg
acacttaaagttctcaaggcaattttgcatggaacatggatccttaagactgaatggata
aaagcatgcatggaagctatgcatcctgtggatgaagagccttatgaagttagtctagac
aatcatggctgttgtgacggccccaaagctggcagactcagggccctggaaaatgttcca
aagctgtttgatggcttaaatttctacttcatgggggacttcataccagcttacagggaa
gatctactggatttggtgattactgcaggaggtggtgttgttgagagcaagcaacagttg
gcttcacttgctcatgcagcaacatttgtggtctataacaacgatcccatgcaagtagtg
caagggtgcatatttgaagaggatggttcttcttcctcttcttcttcatctgcattgcag
agactggaagcagcagcaaaagagttgagtgatgaacttgggtctcagcctcaggtcatt
gcccacacatggcttctggaatcaattgctgcttccaagttgcagccttttggtaaataa
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