Diospyros lotus (date-plum): 127796633
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Entry
127796633 CDS
T10632
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127796633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127796633
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127796633
Spliceosome [BR:
dlt03041
]
Complex A
U2 snRNP components
U2 related factors
127796633
Complex B
127796633
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
127796633
NCBI-ProteinID:
XP_052184838
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All DBs
Position
3:41209143..41215534
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AA seq
1189 aa
AA seq
DB search
MEETKHKSCRKEDSEGREDSKSRSHRKDESGSKEDLKTRSHRSDWEDSEIKEESKSRSLR
RDRGDRERDGVRKSDKDRDRHRDSSDKRKDRRSEREKSADDDKYSERESRRSERERSVDE
KHREREKNKDRHRDRDKDKDKKRRQEEDRTRDRDRAKDKERDREDRVEADRERKREREER
EKRDRERDRAREREKEREKRERDRIRERDKFRDVSSDDDEGDVMDRKRRRKEEDSRERER
GRSSRSKRNREDGEDSSPRKRSDEDLSEKKEVRTREEDLEEEQRKLDEEMEKRRRRVQEW
QELRRKKEESEREKLGVTSNADEPTAGKTWTLEGESDDEEPVPEEKTGIDINSDGDVRPM
DEDGVPMVVDSQNGAWAAPAPQNDGDGASVDEEIDPLDAFMNSMVLPEVEKLNTAVVPSA
SEGKSSNLNKDKSENQTNGVPRKGLSKSIGRIIPGEDSDSDYGEIEKDEDAVEDEDDDEF
MKRVKKTKAEKLSIVDHSKIEYPPFRKNFYIEVKEISRMTSEEVAAYRKQLELKIHGKDV
PKPIKTWHQIGLSTKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFV
LPMLRHIKDQPPLVSGDGPIGVIMAPTRELVQQIHSDIKKFTKVMGLTCVPVYGGSGVAQ
QISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV
QNTRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFL
RLLELLGEWYEKGKILIFVHTQEKCDALFRDLIKHGYPCLSLHGGKDQTDRESTISDFKS
NVCNLLTATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEED
ARYAPDLVKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVR
RAAKKAQAREYGFEEDKSDSDDEDEGIKKAGGDFSQQAILAQAAALAAASKVSVGTTPAS
AVQLLPNAGLPVSLPGVLGLTIPGAAAVVPGAPVPITAGDGAARAAALAAAMNLQHNLAK
LQADAMPEHYQAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIPGPG
ERKLYLFIEGPTEQSVKRAKAELKRVLEDITSQALSLPGSGQPGRYSVL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaagagactaaacataagtcgtgtaggaaggaagattcagaaggtagagaggattcg
aagagtaggagtcataggaaggatgaatcgggaagcaaagaagatttgaagactaggagt
cataggagtgactgggaggattctgagatcaaggaggagtcgaagagtaggagtctccgc
agggataggggggaccgggagcgggatggggtgaggaaaagcgacaaggacagggaccga
catcgtgattcttccgataagagaaaggataggcgatccgagagggagaaaagtgcggat
gatgacaagtattcagagagggagagtaggcggtctgagagggagagaagtgtcgatgag
aagcaccgggaaagggagaagaacaaggatcggcatagagacagagacaaggacaaggac
aagaagagaaggcaggaggaagacagaacaagagatagagacagggccaaagacaaagag
cgggacagggaagacagagtagaggcagacagagaaagaaaaagagaaagagaagagagg
gagaagagagatagggaacgggatagggcaagggagagagaaaaagaaagggagaagagg
gagagggacagaattagggaaagagataagttccgggatgttagtagtgatgacgatgaa
ggtgatgtaatggaccggaagaggcggaggaaagaggaggacagcagagaaagggagcgt
gggcggagcagcaggtccaagaggaatagggaggacggtgaggatagtagccccagaaaa
aggagtgacgaagacttgtctgagaagaaagaagtgagaacccgagaagaggatctagaa
gaagaacaaaggaaattagacgaggaaatggagaaacggaggaggagagttcaggaatgg
caagaactgaggaggaaaaaggaggaatctgagagggaaaagcttggagtaacatccaac
gctgatgaacctacagctgggaaaacatggaccttagaaggtgaatctgacgatgaagaa
ccagttcctgaggagaaaacagggatagatataaactccgatggagatgttaggccaatg
gatgaggatggagttccgatggtagttgactctcaaaatggagcttgggctgcacctgct
ccacaaaatgatggcgatggtgcttctgtggacgaggaaattgatcctctagatgctttc
atgaattctatggtattgccagaggttgagaagctgaatacagctgttgtaccttctgct
tctgaggggaagagctctaacttgaataaagataagagtgagaatcaaacaaatggagtg
cccaggaaagggttgagtaagtcaataggaaggatcatccccggggaagattctgattct
gattatggtgaaattgagaaggatgaagatgccgttgaagacgaggatgatgacgaattc
atgaaaagggtgaaaaaaaccaaagcagaaaaactatcaatagttgatcattccaagatt
gaataccccccatttcggaaaaatttttacatagaggtgaaggaaatctcaaggatgacc
tctgaagaggttgctgcttacaggaaacaattggagttgaagatacatggaaaggatgtt
cccaagccaattaagacttggcatcaaattggtctatcaactaaaattcttgagacaata
aagaagcttaactatgaaaaaccgatgccgattcaagctcaagcactgccaataataatg
agcggtcgagactgtataggtattgcaaagacaggctctggaaaaacactggcctttgtg
ctaccaatgttgaggcatataaaagatcagccacctttggtgtctggagatggtcctatt
ggggttataatggcacctacaagagagcttgtccagcagatccacagtgacatcaagaaa
tttacaaaggtaatgggtctcacttgcgtgcctgtatatggaggttctggtgttgctcaa
caaattagtgaactgaaacgaggggctgagattgtggtgtgcactccaggtaggatgatt
gatattctttgcactagtggcggcaaaattacaaatctgcgcagagttacttatctagtc
atggatgaagctgatcggatgtttgatatgggttttgaaccacagatcactcggattgtt
caaaatactcgacctgaccgccaaactgtactcttctctgctacttttcctcgtcaggtt
gaaatattggctcgcaaagtgctgaacaagcctgtggaaatacaggttggtggtcgaagt
gttgtgaataaagacattgcccagttggttgaggtgaggccagaaaatgaaaggttctta
agactgttagaactacttggggagtggtacgagaagggtaagattttgatttttgtacac
acacaggagaaatgtgatgctttattcagggatctgataaagcatggttatccttgcctc
tccctccatggtggtaaggatcagacagatcgtgaatcaaccatttctgatttcaaaagt
aatgtttgcaatttgttgactgcaacgagtgttgctgccagaggtttagatgtaaaggag
cttgaactggtaataaattttgatgttcccaaccactatgaagactatgttcatcgtgtt
ggtaggacaggacgagctggacgaaaaggctgtgctatcacatttatttcagaagaagat
gcaagatatgcgccagatcttgttaaagcactggaactttctgagcaagttgttccagat
gatctgaaagctcttgctgatggcttcatggcaaaggtgaatcagggacttgagcaagcc
catggaactggttatggtgggagtggttttaaatttaacgaagaggaggatgaggtgcgg
agagcagcaaagaaagcacaggcaagagagtatgggtttgaggaagacaagtcagattca
gatgatgaagatgaagggatcaaaaaggcaggtggtgacttttctcagcaagctatcctt
gctcaggcagctgcccttgctgctgcatctaaagtgagtgtgggtacaacccctgcatca
gctgttcaactcctcccaaatgctggattacctgtttctttgccaggtgttcttggtcta
acaatacctggtgcagcagctgttgtgcctggtgctccagtgccaattactgcaggtgat
ggggcagctagggcagcagcactggcagctgcaatgaatttgcagcacaacttggccaag
ctacaggctgatgccatgcctgaacattatcaagcagagttggagataaatgattttccc
caaaatgctcgttggaaggtcacacacaaggagactttgggcccaatttctgaatggact
ggagctgcaattaccaccagggggcagtattttcctcccggtaagataccaggaccaggg
gagcgcaagctctatttgttcatagagggacctactgaacaatctgttaaaagggcaaaa
gcagaattgaaacgtgtactggaagacattacgagccaagcattatctcttcctggttct
ggccagccaggcagatactcagttttgtag
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integrated database retrieval system
