Diospyros lotus (date-plum): 127797945
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Entry
127797945 CDS
T10632
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127797945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127797945
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
127797945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
DEAD
Motif
Other DBs
NCBI-GeneID:
127797945
NCBI-ProteinID:
XP_052187132
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All DBs
Position
3:complement(35798846..35844253)
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AA seq
1309 aa
AA seq
DB search
MRKRNIHQSIHQFDACPFEAFYKGSWKIVECLRIRMGAITALLADGGDTFEENVPLSNIR
MRSRKAKLSDCTCFIRPGLDICVLSSSQLTESSSEEKNSEPVWLDAKIISIERRPHEPEC
SCQFFVSFYLTQGPLCVARKTLAKDTIIVQIDQISILQKLKRDACVTEHYRWNFSEDCSS
LERYKLFTGKFSSDLSWLLVASVLKQIEFEVRSIGNKIVYQIIDDDYNENSLKLEGHATA
VNFKLENGISIPIIVPFAPTDILEKETAFDVHEDESSSFYDPMGLRRSKRRNIQPERYLG
CDLSELDIDDAPRMGTCRTYRWEYKEMPLALSIQADHAYYLDDHSIQADRGYFLDDHSIQ
ADHAYYLDDHSMGDERVRSYKKGSCRNFFGGQSKSKARVLKSIVSTQREDLPKLDSPRKH
QCELAIVPVPDETDQMIYQEDPLDAPFPGNFSGEMNEVFSKYVCINGTSAQTRRSVYDID
LGEAESGWKGGWTGGWKGRNSRKRSRGKRDYFISSGRESFRYAGTNARKSFSASMYREMI
RKCMESIKSTMHKEQPPVIDQWNEIQSGKSKNQKNTSEIPSTIEEDDAEIEMLWKEMELC
MASTYFQDSEESNVELPTNVVQTTSEQCGHVCRHEYRLNEEIGILCRLCGFVSTEIKDVV
PTFLHCAGSNPYKGTQNEEDSGHKPDEGSGLDLFSIPAPSSTPLSEGEGTVWTLIPDLKW
KLRLHQMRAFEFLWRNIAGSVVPTVIESMVKKRGGCVISHSPGAGKTLLIIAFLVSYLKL
FPGSRPLVLAPKTTLYTWYKEIIKWEVPIPVYQIHGGSTYRGEVLRRKLRVSPGDPKPNQ
DFMHVLDCMEKIQKWLAHPSVLLMGYTSFLTLTREDSKFAHRQYMAQVLRQCPGILILDE
GHNPRSTKSRLRKALMKVETGLRVLLSGTLFQNNFGEYFNTLTLARPTFVTEVLRELDPK
FKRGKKAAKTRFSLENRARKFFIDKIGMKINSSVTEERMNGLVTLKNLTSEFIDVHEGGS
YDNLPGLQCYTLMMKSTPYQQELLVKLQNQRPIYKGFPLELELLITLGSIHPWLIRTTAC
ATQYFSVEELEGLEKYKFNLKFGSKVRFVMSLVPRCLIRKEKVLIFCHNIAPINLFVEIF
ELFYGWRKGEEVLVLQGDVELFERGRVIDKFEEPGGPSKVMLASISACAEGISLTAASRV
ILLDSEWNPSRSKQAIARAFRPGQAKVVYVYQLLAAGTLEEEKHGRTTWKEWVSSMIFSE
ELVEDPSQRQAEKIEDDILREIVEEDRAPLFHMIMKNEKASNLMVRGKD
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaaggaatatacatcaaagcatacatcaatttgatgcttgcccttttgaggca
ttttataaaggctcatggaaaattgtggagtgcttgcgaattaggatgggggctataaca
gcacttttagctgatggtggagatacctttgaagaaaatgttcccttgtcaaacattcga
atgaggtcaagaaaagcaaaattatctgactgcacctgcttcataaggcctgggcttgat
atttgtgtgctttcaagctctcaacttacagaaagttcaagtgaagagaaaaattcagaa
cctgtctggctggatgctaaaataatatctattgagaggaggcctcatgaacctgaatgt
tcttgccaattttttgttagcttctatcttacccaaggccctctttgtgtggcaaggaaa
acacttgctaaagatacaatcattgtacagattgatcaaatttctatccttcaaaagctc
aaaagggatgcttgtgtaaccgagcactatcgttggaatttctctgaggactgctcttca
ctggaacgatacaaattgtttacaggaaagttctcatctgatctttcatggctacttgtt
gcatctgttctgaagcaaattgaatttgaggtcagatcaataggaaacaagattgtctat
caaattattgatgatgactacaacgagaattcactgaaattggaaggccatgcaactgct
gtgaatttcaaattagaaaatggaatttcaatacccataattgtcccatttgctcccact
gatattcttgagaaggaaactgcttttgatgtgcatgaagatgaatcatcatcattttat
gatcccatggggttgcggcgatccaagcgtcgaaatatacaacctgagcgttacttaggt
tgtgatttgtcggagttggatattgatgatgcacctcgaatggggacatgcagaacatac
agatgggagtataaagaaatgccattggcactatccatccaggctgatcatgcatattat
ttggatgaccactctatccaagctgatcgtggatattttctggatgaccattcgatccag
gctgatcatgcatattatttagatgaccattctatgggtgatgaaagggtccgttcatat
aaaaagggatcctgtaggaatttttttggaggccagagtaagagcaaagcaagggtttta
aaatcaatagtgtctactcaaagagaagatctgcctaaacttgatagtccaagaaaacac
caatgtgaacttgctattgttcctgtacctgatgagactgatcaaatgatatatcaggag
gatcctcttgatgctccatttcctggcaatttttctggtgagatgaatgaagtattttct
aagtatgtttgcataaacggaacctccgcacaaaccagaagaagcgtttatgatatagac
ttgggagaggctgaaagtggatggaagggtggatggacgggtggatggaaggggagaaat
tcgcgtaagaggtcccgaggaaaaagggattattttatatcttcaggacgggagagtttt
cgttatgcaggaaccaatgcaagaaaatcctttagtgccagtatgtacagggaaatgata
aggaaatgtatggagagcataaaatccacaatgcataaggaacaaccaccagttattgat
cagtggaatgaaatccagtcaggaaaatctaaaaaccaaaagaatactagtgaaataccc
tcaacgattgaggaagacgatgcagaaattgaaatgttgtggaaggaaatggaactttgc
atggcatcaacttactttcaagacagtgaggagtccaatgttgaacttcccactaatgtt
gtgcaaactacgagtgaacaatgtggacatgtctgccgacatgaatacagactaaatgaa
gaaattggaattctttgcagattatgcgggtttgtgagcactgaaataaaggatgttgtg
ccaaccttcttgcactgcgcgggttcaaacccatacaaggggacacaaaatgaagaagat
tcagggcataagccagacgaaggctcagggcttgatcttttcagcattcctgccccctcc
agtacgcccttatcagagggggaaggcactgtgtggaccttaatacctgatctgaaatgg
aaattacggctgcatcaaatgagagcctttgaatttctctggcgtaacattgctggttct
gtggtaccaacagttatagaatccatggtcaagaaaagaggcggttgtgttatctctcat
tcccctggggctggtaaaactttgcttatcatcgcattccttgtgagctacttgaagtta
ttccctggatcacggcctttggtccttgctccgaaaacaacactgtatacctggtacaaa
gaaataattaagtgggaagttcctattccagtttatcaaatccatggtggcagtacctat
agaggtgaagtcttaaggaggaaattgagagtatcaccaggagatccgaagcccaaccag
gactttatgcatgttttagactgcatggagaaaattcagaaatggcttgcacatccaagt
gtacttctgatgggttatacctcttttctgacattgacacgagaagattccaaatttgca
cacagacaatacatggcccaagtgttgcgacaatgtcctgggattcttattcttgacgag
gggcacaacccaagaagcactaagtcaaggttgaggaaggctttgatgaaagttgaaaca
gggctgagagttttgctttctggtacattatttcagaataattttggggaatatttcaac
accctcactttggcaagaccaacttttgtcactgaagtgctgagagaattagaccctaag
tttaagaggggaaagaaagctgcaaaaacgcggttttctcttgaaaatagagcaagaaaa
ttcttcattgacaaaattgggatgaagattaattcaagcgtaacggaagaaagaatgaac
ggtctggttacattgaagaatttgactagtgaatttatagatgtgcatgaaggtgggagc
tatgataaccttcctggtttacaatgctacaccctaatgatgaagtcaacaccttaccag
caagagcttttggtaaaacttcagaatcaaagacctatttacaaaggattccccctggag
ttggagcttctgatcactcttggatcaatacatccttggttgattagaactacggcatgt
gccactcaatatttcagtgtggaagagttggagggtcttgagaaatataagttcaacctg
aagtttggttccaaagtgagatttgttatgagccttgtgcctcggtgcctcatcaggaag
gagaaggtcctgatcttttgccacaacattgctccaattaacctatttgtggagatattt
gagttgttctatgggtggcgtaagggtgaagaagttttggtccttcaaggggatgttgaa
ctttttgaacgcgggagggtcatagataagtttgaggaaccgggggggccctcgaaggta
atgctggcttcaatatcagcttgtgccgaggggattagtctgactgcagcatctcgtgtg
atcttactggattcagagtggaatccttctaggagcaagcaagccatagcaagagctttc
cggccaggtcaagccaaggtggtctatgtgtatcagctcttggccgctggcactctggaa
gaggagaagcacggcaggaccacttggaaggaatgggtttcgagcatgatattcagcgag
gaactagtggaggatccttctcagcgccaagcagaaaaaatcgaagacgacatattgagg
gagatagttgaggaggatagagctccattattccatatgattatgaaaaatgagaaagct
tcaaatctgatggtcagaggtaaagactag
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