KEGG   Diospyros lotus (date-plum): 127798703
Entry
127798703         CDS       T10632                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
dlt  Diospyros lotus (date-plum)
Pathway
dlt03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dlt00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    127798703
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dlt03019]
    127798703
   03036 Chromosome and associated proteins [BR:dlt03036]
    127798703
Messenger RNA biogenesis [BR:dlt03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     127798703
Chromosome and associated proteins [BR:dlt03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     127798703
    COMPASS/SET1 complex (yeast)
     127798703
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_CAF1B_HIR1 WD40_Gbeta ANAPC4_WD40 Beta-prop_WDR3_2nd EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_NOL10_N Beta-prop_SPT8 TRM82_WD WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_NUP159_NUP214 PAC11 WD40_RFWD3 NBCH_WD40 Beta-prop_ACSF4 CFAP251_N WD_LRWD1 Beta-prop_VPS8 Tricorn_2nd Beta-prop_NWD2_C PD40
Other DBs
NCBI-GeneID: 127798703
NCBI-ProteinID: XP_052188209
LinkDB
Position
4:38545437..38597409
AA seq 339 aa
MAALTALNDEVVRSMAIGAVFSDFVGKINSLDFHRTADLLVTASEDDSVRLYDIANAKLL
KTTYHKTHGADRICFTHHQSSVICSSRYNLDSTGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPVNDSFMSGSVDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDMAEVCDIKFSNDGKSMLLTTTNNSIYILDAYGGEKRCAFT
LDPSPNTMIEATFTPDGQYVVSGSGDGKLHAWSISKRTKVASWDSHIGVASCLKWAPRRV
MFVAASSVLTFWIPGNSKSPAEAGKGNPEAVKLSEHIPQ
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcagcacttacggcgctcaacgacgaagttgttcgcagtatggcaatcggagccgtt
ttctcagatttcgttggaaagataaattcactcgactttcatcgtactgctgatttactt
gttacggctagcgaggatgattcagtccgactatatgacatagcaaatgcaaagttgtta
aagaccacatatcataagacgcatggtgctgatcgtatatgctttacccaccaccaaagt
tctgtcatatgctcttcaagatacaatttggattctacgggagagtccttgcggtatctg
tcaatgtatgataatcggtgccttcgttactttaaagggcataaagagagggtggtttca
ctctgcatgtccccggttaatgacagctttatgtctggttctgttgaccatagtgtcaga
atatgggatttacgtgtaaatgcctgccagggaattttacgtttacgaggaaggccagca
gttgcatatgaccaacaaggtcttgtatttgcagtggcaatggaaggcggcgctatcaaa
ttatttgattcacgatcctatgacaagggaccatttgatacatttttagtaggtggagat
atggcagaggtttgtgatataaaattcagcaatgatggtaaatcgatgctcctgacgacc
acaaacaacagcatttacattcttgatgcttatggaggggagaagcgctgtgcattcact
ttggatccatcaccaaatacaatgatagaggcaacatttacccctgatggccaatatgtg
gtttcaggatcgggagacggcaagttgcatgcatggagtatcagcaaacgaacgaaggta
gcaagctgggacagccacataggcgtggcctcatgcttgaagtgggcgcctcgcagggtc
atgtttgttgctgcttcttcagttctaacgttttggataccgggcaattcaaaatcaccc
gccgaagctggaaaagggaaccctgaagctgtaaaactatccgaacacattcctcaatga

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