KEGG   Diospyros lotus (date-plum): 127798872
Entry
127798872         CDS       T10632                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
dlt  Diospyros lotus (date-plum)
Pathway
dlt03013  Nucleocytoplasmic transport
dlt04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:dlt00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    127798872
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    127798872
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dlt03019]
    127798872
   04131 Membrane trafficking [BR:dlt04131]
    127798872
Messenger RNA biogenesis [BR:dlt03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     127798872
Membrane trafficking [BR:dlt04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    127798872
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    127798872
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    127798872
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR35_TULP_N Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_Vps41 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_WDR75_1st EIF3I Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 127798872
NCBI-ProteinID: XP_052188471
LinkDB
Position
4:complement(37280166..37282139)
AA seq 301 aa
MPAQKIEMGYSDTVHDVSMDYYGKRVATVSSDTTIKIIGVSNNSASQHLATLSGHQGPVW
QVSWAHPKFGSILASCSYDGRVIIWKEGHQNEWTQAHVFTDHKSSVNSIAWAPHEVGLCL
ACGSSDGNISVFTALSDGGWDTTRIDQAHPLGVTSISWAPFTALGALVGCGVLDPIQKLA
SGGCDNTVKVWKLCNGNWTMDCFPSLQMHADWVRDVAWAPNLGLPKSTIASASQDGTVVM
WTMAKEGEQWEGKVLNDFKIPVWRVSWSLTGNLVAVAAGEDNVTLWKEAVDGEWQQVTIV
D
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctgcccagaagattgaaatgggttacagtgacacagttcatgatgtctccatggat
tactatggaaagcgtgtagcaactgtctcatccgataccaccataaaaataattggggta
agcaacaactctgcttcacaacaccttgcaactctgagtggacatcaaggccccgtctgg
caagtttcctgggctcatcctaagtttggatcaatccttgcttcctgttcctatgatggt
agggtaataatctggaaggaagggcatcaaaatgagtggacacaggctcatgttttcact
gaccataaatcatccgtcaattcaattgcttgggcgcctcatgaagtcggactctgctta
gcttgtggatcttccgacgggaatatctctgtcttcactgcactatccgacggtggctgg
gacacaacccggatcgaccaagctcacccacttggagtgacctcaatttcatgggccccg
ttcacggctcttggtgccttagtcggatgtggtgtactggatcctatacaaaagctggct
tctggcggttgtgataatacagtgaaggtgtggaaactatgcaatggaaattggacgatg
gattgcttcccttccttacagatgcatgccgactgggtgagggatgtggcttgggccccg
aacttgggccttccaaagtcgactattgccagcgcttcacaagacgggaccgttgtgatg
tggacgatggcgaaggaaggtgagcaatgggaaggcaaagttttgaacgatttcaagatt
cctgtttggagggtgtcatggtccctaacagggaacttggtggctgtggctgctggggaa
gacaatgtcacactgtggaaagaagcagttgatggggagtggcaacaggtgacaatagtt
gattag

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