Diospyros lotus (date-plum): 127799343
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Entry
127799343 CDS
T10632
Name
(RefSeq) cleavage stimulating factor 64 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127799343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127799343
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127799343
U7-dependent histone pre-mRNA processing factors
127799343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
RRM_10
partial_CstF
Motif
Other DBs
NCBI-GeneID:
127799343
NCBI-ProteinID:
XP_052189247
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All DBs
Position
4:complement(17647919..17674203)
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AA seq
490 aa
AA seq
DB search
MATSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVIDRESGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKNSDRNREQGRAGPGMVANADLQKQLGGPAIIGD
SGFDQPIGLQVAMAAASVMAGTLGGVQVSRELSQNGLQGQPGLFSDPLTLHLAKMSRNQL
NEVMSELKVIATQNKEQARQLLLACPQLPKALFQAEIMLGIVTSKMLQTSNIRQVSGLPG
QPLSQDGQQSQQPSGPNFPGLPPLAQNRMQIGVMPRVQEAQPSSVHMKSLTHQPQSQLPQ
PAQNQILEQHPVPGQSGISTGPSMRPALSDMHLRQLMPGATSSSMKQQIQLPFFQQRGQV
GAANIGHNGQQVTPNALFQPPLSTRPPLPDQNFQSGASPSGIPPMINKDVVNVPISVSRQ
SQVSNIASSVHQIPQAEVARNSQKQVPQVQLPPEMESALLQQVLSLTPEQLSSLPPDQQQ
QVIQLQRMLR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggccacttctcagcaccgttgcgttttcgttggaaatataccttatgacgccaccgaa
gagcagcttatacaaatttgcgaggaggttgggcctgttgtatccttcagattagttatt
gatagagaatctgggaaaccaaaaggttatggattttgtgaatacaaggatgaagagaca
gctttaagtgctcgtcgtaatcttcaggggtatgagatcaatggccggcaattacgagtt
gattttgctgaaaatgacaaaaattctgacagaaatcgtgaacagggtcgtgctgggcct
gggatggtggcaaatgctgacctgcagaaacaattaggtggtccagcaattattggggat
tctggtttcgaccagccaattggtctccaagtagctatggccgctgcatctgtgatggca
ggaacacttggaggtgttcaggttagtagggagttgagtcaaaatggtttgcagggtcag
cccggacttttcagtgatcctttaacccttcatctggccaaaatgtcaagaaaccagcta
aatgaggtcatgtctgagctcaaggtaatagctacacaaaataaggaacaagctcgtcag
ttattgcttgcatgcccgcagttgcctaaagctcttttccaggcagagatcatgctagga
atcgttacctcaaaaatgttgcagacatcaaatattcggcaggtttctggtctgccaggg
caacctctatcacaggatgggcaacagagtcagcaaccatcaggtccaaattttcctgga
ctacctcctcttgcacaaaacaggatgcagattggggtgatgcccagagtacaagaagcc
caaccatcttctgtgcatatgaaatctttgactcatcagcctcaaagtcaacttccacag
ccagcccagaaccaaattttggaacaacacccagtgcctggtcaatctggaatttcaaca
ggtccatcaatgcgcccagccctgagtgatatgcatctgagacaacttatgccgggggca
acttcatcttctatgaaacagcaaatacaattgcctttctttcaacaacgaggacaggtc
ggagctgctaatatagggcataacggtcagcaggttaccccaaatgctctttttcagcct
cccctttctactcgtcctccattaccagatcagaactttcagtctggtgcctcaccatcg
ggtattcctcctatgataaacaaggatgttgtaaatgtgccaatttctgtatccagacaa
tcccaggtctccaatattgcctcatctgtgcaccaaattccccaagcagaagtggctcga
aactctcagaagcaagttcctcaggtgcagcttcctcccgagatggagtctgccctactg
caacaagtgctgagcctcacaccagagcagctgagttccctgccacccgaccagcagcag
caagtcattcagctccaacggatgctgcggtga
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