Diospyros lotus (date-plum): 127801696
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Entry
127801696 CDS
T10632
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127801696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127801696
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127801696
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127801696
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127801696
U7-dependent histone pre-mRNA processing factors
127801696
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
127801696
NCBI-ProteinID:
XP_052192997
LinkDB
All DBs
Position
5
Genome browser
AA seq
694 aa
AA seq
DB search
MASTGQPAPSLKRRDPPATREGDKLIITPLGAGNEVGRSCVHMSYKGKTILFDCGIHPAY
SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL
SDYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIH
STVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYIN
SMNERIRNQFANSNPFDFKHISPLKSIENFDDVGPSVVMASPGGLQSGLSRQLFDKWCSD
KKNACVIPGYVVEGTLAKSIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGEANEMGRLKQKLISLFADGNTKIITPKNAQSVEMYYNSDKMAKTIGRL
AEKVPEAGEAVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVIQRISIPYSGAFGVIKHRL
KQIFESVESSNDEESGVPTLCVHNCATVKQESDKHISVHWTADPISDMVADSTVALVLNI
SREMPRVFVESEGEVNEEEKERKAEKICRALLASLFGDVTAGENGRLVISVDGQMARLDR
LTGDVESENEGLRERVRTAFRRIQSAVKPIPSCS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacgggacaacccgcgccgtctctgaagagacgtgatccgccggcgacaaga
gaaggggataagctgattataacccctttaggtgccggtaacgaagtaggacggtcttgc
gttcatatgtcctacaaagggaagacaattctgtttgattgtggaattcatcctgcgtac
tcgggcatggctgctttgccatactttgacgaaattgatccttctaccattgatgtgctc
cttgtcactcactttcacttggatcatgctgcttcacttccatatttcttggagaagacc
acgttcaaggggcgagttttcatgactcatgcaacaaaggccatctataagttgctgtta
tcagattatgtgaaagtgagcaaagtttcagttgaagatatgttgtatgatgaacaagat
attcttcggtcaatggacaaaattgaggttattgacttccatcaaaccttagaagtaaat
ggaatccgcttttggtgttacactgctggccatgtccttggcgctgccatgttcatggtt
gacattgctggtgtcagagtcctctatactggagattattcacgtgaagaagatcggcat
cttcgtgctgctgagcttccacaattttctcctgacatttgcataattgaatccacttat
ggtgttcaacttcatcaaccacggcatattcgagagaagcgatttacggatgtcattcac
tctaccgtttctcaaggtggtcgtgtcttaattccagcatttgcccttggccgtgcccaa
gaactgttactgatccttgatgagtattggtcaaaccatcctgagctccataatattccc
atatattatgcctcccctcttgcaaagaggtgcatggcagtttatcagacctacatcaat
tccatgaatgaaaggatacggaaccaatttgccaattcaaacccctttgatttcaagcac
atatcaccactgaaaagtattgagaattttgacgatgtaggcccctcggttgtcatggca
agcccgggtgggcttcagagtgggttgtctcgccagctgtttgataagtggtgctctgat
aagaaaaatgcttgcgtcatacccggatatgttgtggagggaacactcgcaaaatccatc
attaacgaacccaaagaagttaccctaatgaatggcctaacagctcctctcaacatgcag
gtccactacatttccttctcggctcatgcagattatgctcagacaagtacattcttgaaa
gagcttatgcctcccaacataattcttgttcatggagaagctaatgagatggggaggctg
aagcagaaacttatctctctatttgctgatggcaataccaaaatcattacccccaagaac
gctcagtctgttgaaatgtactacaactccgataaaatggcaaaaaccattggaaggctg
gctgaaaaggtcccggaagcaggtgaagcagtcagtggtttgttggtgaagaagggattc
acttatcagatcatggcgcccgatgatctccatgtgttctcacagctatcgacagccaat
gtcattcaaaggattagcatcccttactctggagcgttcggcgtgataaagcacaggcta
aagcagatatttgagagtgtagaatcgtcgaatgatgaagaatccggggttcctactttg
tgcgtgcacaactgcgcaacggtgaagcaggaatcagacaaacatatctcagtgcattgg
actgcagatcccataagcgacatggtcgcagactcaaccgtggctctggtgttgaatatc
agccgggagatgcccagagtgtttgtagagtcagagggtgaagtaaacgaagaagaaaag
gagagaaaggcagagaagatctgccgagcgctgcttgcctcgctttttggagacgtgacg
gctggagagaatggaagactggtgataagcgtggatggacaaatggcacggctagacagg
ctcactggcgacgtggagagtgagaatgaaggcctgcgggagagggtgagaacagcattt
cgcagaatccaaagtgctgtgaagccaatcccctcttgttcttag
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