Diospyros lotus (date-plum): 127801862
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Entry
127801862 CDS
T10632
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127801862
09123 Folding, sorting and degradation
03018 RNA degradation
127801862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127801862
03041 Spliceosome [BR:
dlt03041
]
127801862
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127801862
mRNA degradation factors
5'-3' decay
Lsm complex
127801862
Spliceosome [BR:
dlt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127801862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
127801862
NCBI-ProteinID:
XP_052193310
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Position
5:complement(7096870..7103240)
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AA seq
99 aa
AA seq
DB search
MSNRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtccaataggaaagagactgttctggatttggcaaagtttgttgacaagggtgttcaa
gtcaagcttactggtggaagacaagtaacagggaccctgaaaggatacgatcagttgttg
aacctcgtcttggatgaagcgatagagttcctaagagatccggatgatcctctgaagact
actgatcaaacaaggcgtcttggcttaattgtgtgtcgggggactgcagtaatgcttgta
tcgccaactgatggaacagatgagattgctaatcctttcctccagccagatggggcctag
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