Diospyros lotus (date-plum): 127802028
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Entry
127802028 CDS
T10632
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127802028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127802028
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
127802028
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
127802028
NCBI-ProteinID:
XP_052193617
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Position
5:complement(15382700..15394399)
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AA seq
200 aa
AA seq
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MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLGANSPSLQPNWQIGECVAIWW
RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFHFNMIYP
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtgacatcgccggtggtgaacacttaccccctctcgagctacaccttcggtacgaag
gagccgaagatggagaaggacacttctgtcgccgatcgcctcgctcgtatgaaagtcaat
tatatgaaagaaggcatgaggacaagcgttgaagcaatcctactagtgcaagagcataac
catcctcacattctacttctacaaattggaaacaccttttgcaagctccctggtgggcgt
ctgaagcctggagaaaatgaaattgaaggtttgaaaaggaaattgtcaagcaaactgggt
gctaattctccttcattgcaaccgaactggcagattggtgagtgtgtggccatctggtgg
aggccaaactttgaaactataatgtacccctattgtcctccacacatcacaaagcctaag
gagtgtaaaaagcttttccttgttcacctgtctgagagagagtactttgcagtacccaaa
aatttgaaactgctggctgttcccctttttgagctctacgataatgttcagagatatggg
ccggttatatcaacaattccacagcagctttccaggtttcatttcaacatgatctaccca
tga
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