Diospyros lotus (date-plum): 127802071
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Entry
127802071 CDS
T10632
Name
(RefSeq) uncharacterized protein LOC127802071 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127802071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127802071
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127802071
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127802071
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127802071
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
ATG16
Motif
Other DBs
NCBI-GeneID:
127802071
NCBI-ProteinID:
XP_052193707
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All DBs
Position
5:complement(5033742..5049591)
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AA seq
704 aa
AA seq
DB search
MNPPRPSPVNSLPCCPDQVHKHGTTDSSAFRQVIQPNQFQGNPNPTQTQPQKSNPFNNNY
NSHLGNGPFPIANRPISVSMASPNNPNLQLQQNGVPFTNLSHVGLVMNPMLQPNQFAHSP
FNLPQFLGQNAGFLNGQLGLLTQLQNVNQLMQMPISSYPHGVPCNMPLYPNQVSQALVPQ
NPTILANPWFGVTNCNAFLQPSNQGQPNFVMPAVDANATKSHNVTRQLQGNSPLLPAFGS
VPPQQNATQQFQGNSPLHPAFGSVPPHQNATQQFQGNSPLPPALGSVPPQQNATQQLQGN
SPLPLAFGSVPPQQIQMSFQPPDSKMSKGNCRNGSGVSGLNAKWKDSQNRNFNKNPKRDA
LHRDRGFPNDSNMKNVKGKYGFHNKYGGNGYRNDSGRKSELANSANQNQVQHRRFPSLNY
TGQEIQKWREERRKNYPSRANVEKKLAEKTTDLEVNDEYAKLRRKQLKEILAKQAELGCE
VAEIPSYYLSDPEEQVHGKKENKVLAKKEYLQNKFRNGRFSQNKRFKKHKFGDPGSTNTH
DQGEPLFKKQKLVDNDSLCNRSLDKRQPTLLQKLLSANIRRDRSRLLQVFRFMVINSFFK
DWPEKPLRFPSVIVKEETGSKEVVEGKTASSRECLSGSQGRTTVEERCHVNHNHSDDGNG
DGDDNGGNRNNEFGLQETKARLGSLENVNGGRVEESGEEGEIID
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcctcgcccttctccggtcaattcgctcccttgctgtcccgatcaggtccat
aagcatggaaccactgattcttcagcttttcgacaggttattcaaccgaaccagttccaa
gggaatccgaatcctacacaaacacaacctcaaaaatcaaatcccttcaataataattac
aacagccatctgggcaacgggccttttcccatcgccaacaggccaatttcagtatctatg
gcttctccaaataatcccaatctacaactgcagcaaaacggtgtaccctttaccaaccta
tctcacgttggactggtgatgaatccaatgctccagcccaaccagtttgctcacagtcct
tttaacctgcctcagtttttaggccaaaatgcaggttttctaaacggacaacttggtttg
ctgacccaactgcagaacgtcaatcagttaatgcaaatgccgatatccagttatccccac
ggtgttccatgcaatatgcctctgtacccgaatcaagtttcccaggctttggttcctcaa
aatcccactattctcgcaaatccatggtttggtgttacgaattgtaatgcatttctgcag
ccaagcaaccaagggcagccaaatttcgttatgccagctgtagatgcgaatgcaaccaag
tcccataatgttactcggcagttacaggggaactcacctctactacctgcttttggctcg
gttcctccacaacaaaatgctactcagcagtttcaagggaactcacctctacatcctgct
tttggctcagttccaccacatcaaaatgctactcagcagtttcaagggaactcacctcta
ccacctgctcttggctcagttccaccacaacaaaatgctactcagcagttacaagggaac
tcacctctaccacttgcttttggctcagttcccccacaacaaattcagatgagtttccaa
cctcctgacagtaaaatgtcaaagggaaattgcagaaatggtagtggggtcagtggtctg
aatgccaaatggaaagattctcaaaaccgaaacttcaataagaatcccaaacgagatgcg
ttgcatagggataggggatttccaaacgacagcaatatgaaaaatgtgaagggaaagtat
gggttccataataaatatggaggtaatggatatagaaatgacagtggaagaaaatctgag
cttgctaattctgccaaccaaaatcaggtgcaacacaggagatttccctccttgaattat
acggggcaagaaattcaaaagtggcgtgaagaacggagaaagaactacccctcaagagct
aatgtggagaagaagctggcagagaagacaacagatctggaggttaatgatgaatatgcc
aagctacgacgaaagcaacttaaagaaattttggcgaagcaggcagagttaggttgtgaa
gttgctgaaatcccatcctactatctttcagatcctgaggaacaagtgcatgggaagaaa
gagaataaggtgttggctaaaaaggagtatttgcaaaataagtttagaaatggacgattc
tctcagaataagcggtttaagaagcacaagtttggagatcctggttcaactaatacgcat
gatcaaggtgagccgttattcaagaagcagaagttagtggacaatgactcattatgcaat
cgttctttggacaaaagacaaccaactctattgcagaagcttctcagtgcaaatattagg
agagatagaagtcgtttgttgcaggtttttaggttcatggtgataaattctttcttcaaa
gactggcctgagaagcctctgagatttccttcagtaatagttaaagaagaaacaggatcc
aaagaggtggttgaaggaaaaacagcgagttcacgggaatgtctctctggcagccaaggc
aggacaactgttgaagaacgttgccatgttaatcataatcacagtgatgatggtaatggt
gatggtgatgacaatggtggcaatagaaataatgaatttggtttgcaagagacaaaagct
cgtttaggtagcttagagaatgttaatggagggcgagtggaggaatctggggaagaagga
gaaattatagactag
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