Diospyros lotus (date-plum): 127802092
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Entry
127802092 CDS
T10632
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127802092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127802092
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
127802092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
127802092
NCBI-ProteinID:
XP_052193742
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All DBs
Position
5:10653144..10661633
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AA seq
1079 aa
AA seq
DB search
MSSVAKRTRSKTKQLELELYRRWKSAQAESSESDGCARRRGPSSPGIHEEENGVEVIHAM
GNTEENINLESESKLTYHKETGNQSDNEEKEHEANFNLNTECEPEQGIEENEDIINIHNL
ENDAIEAEGTKENDPKQECVLTQKSKSKLGFEEGRDVDHLDQFKEPITIISDEEEEMPLG
PGSRKRELEVHDEVEHGSSYWTRSKAGSRRKPPETAKTVSSSDSDLSMTSGETTDDDSSD
EDFDVLSVRKREPMSKMKEVDEQEQDGDSSKGDDEKNDESVSRKEFPGKNSQKVRLSSSI
GQQVEAQHGFKEGCGIFGSLLYSILDENNIVLEEQASNQAKNLPSREHALPLKFTFELEK
PELVEKSDIDKITDDLFAEMQFAIRSEEMGSSPRTVDSAGPEAERNQTTPFCHGKHNFIL
DEEIGIKCSYCSFVELEIKYVTPSFVSYLNFVSFATIFINDKHFHWISYTILYCSKACLQ
DPCNHAEGTVWDVLPGKKESMYPHQIEGYEFLWRNLAGTTRLSELGKADASKVGGCMISH
APGTGKTRLTIVFIETFLTLFPNCLPVVVAPAGMLFTWEEEFRKWKVQFPFHNLNNPEVS
GQENETSTGLLSKSVFQSKNALRMVKLHSWSKGKSVLGISYTLYEKLAGTKSVQVEGKNK
RKKLTRGKEDELLRKILLELPGLVILDEGHTPRNQRSGIWKTLLQLQTKRRIILSGTPFQ
NNFEELFNTLHLVRPAVADMISSGGRRYYRKQLRGKRAFVYGSSGKEVDSIEKLKATISP
FVHVHKGSILQQSLPGLRECAVLLHPSQLQMEIIKTLQPSANTFKFEHKVALVSVHPSLL
LQCKETSVSDPNVLEQHRLDSYQGVKTRFIMELIRLCVATKEKVLIFSQYINPLELIKDQ
LKSIFNWHEGREVLQMHGTLEQRCRQKFIGIFNDSRSEAKVMLASIKCCSEGISLIGASR
VVLIDVVWNPSVERQAISRAYRFGQEKVVYTYNLMVSGTTEGEKYCRQAEKNRLSELVFS
SGGKEREEKNHATTFSDVILEEMVAHGKLKDMFDRIIYQPKETNLVEKISIPRPIPGSS
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcgtggccaagagaaccagatccaaaacgaagcagcttgaactggaattatac
cgtcgatggaagagcgcccaagccgaatcctcggagtccgacggctgcgcaagaaggaga
gggccttcctctccaggtattcacgaagaggagaatggagttgaggtcatccatgcaatg
ggaaacacagaggaaaatatcaacttggaatccgagtcaaaactaacataccataaagaa
actggcaatcaatctgacaatgaagagaaggaacatgaagcaaatttcaaccttaatacg
gagtgtgagccagagcagggaattgaagaaaatgaagacattatcaacattcacaatttg
gaaaatgatgcaatcgaagcagagggcacaaaggaaaatgatccaaagcaggaatgtgtt
ttgacacagaagtctaagtcaaagcttggatttgaagaaggtagagatgttgatcatctc
gaccaatttaaggaacccataactatcatttcagatgaggaggaagagatgccattgggt
cctggaagtaggaaaagggaactggaggttcatgatgaagttgaacatggcagttcttac
tggacgcgttcaaaagcaggatctagaaggaagcctccagagacagctaaaactgtctcc
agtagtgactcggatctatcgatgacttctggtgaaacaactgatgatgattcaagtgat
gaggattttgatgttttgtctgttaggaagagggaaccaatgtctaagatgaaggaggtt
gatgaacaagaacaggatggtgacagtagtaagggagatgatgaaaaaaatgatgaatct
gtgagcagaaaagaattccctgggaagaatagtcaaaaggtaaggctcagttcttcaatt
gggcaacaggtggaggcgcaacacggattcaaagaaggttgtggtatctttgggagtctc
ctttattctattttggatgaaaataatattgtacttgaagagcaggcatctaatcaagct
aagaatttgccttcgagggagcatgcacttcctctgaagttcacatttgagttagagaaa
cccgagctggtggagaaatcagatattgataaaattacagatgatttgtttgctgagatg
caatttgctatcaggtccgaggaaatgggttcctctcctcgcacggttgacagtgctggc
ccagaagctgaaagaaaccaaaccactcctttctgtcatgggaagcataattttatcctt
gacgaggagattgggataaagtgcagttattgttcttttgtggagcttgagatcaaatat
gtaacaccatcgtttgtaagttatttaaattttgttagttttgctactatctttataaat
gacaagcactttcattggattagctacaccatcttatattgttcaaaggcttgtctacag
gatccttgcaatcatgcagaaggaacagtttgggatgtcttacctggaaaaaaagagagc
atgtatcctcaccaaatagaaggttatgagttcttatggaggaatttagcaggaaccact
cgtctcagtgaattgggaaaggccgatgcaagtaaagtagggggctgcatgatttcacat
gcccctggaaccgggaaaacccggttaaccatagttttcattgagacatttctgacttta
tttccaaactgtctcccagtcgttgttgctcctgctggcatgttgttcacttgggaagag
gagttcaggaaatggaaggtacaatttcctttccataacctgaacaatccagaagtctcg
ggccaggaaaatgagacctccactggattactgtccaaaagcgtgtttcagagcaaaaat
gcgctgcgcatggtaaagttacattcttggagcaaaggaaaaagcgtgcttggaattagt
tatactttgtacgagaagctggctggtacaaaatctgtgcaagttgaaggtaaaaataag
agaaagaagcttactcgtgggaaggaagatgaattgctaagaaagattttgctggagttg
cccggcttggtaattcttgatgaaggacacactccacgcaatcaacggagtgggatttgg
aaaactctcttacaacttcaaacaaaaaggcggatcatcctttcaggcacccctttccaa
aacaattttgaggagctcttcaatacactacatctagtaagaccagcagttgcagacatg
atttcatcaggaggtaggagatattacagaaagcaactgagagggaaaagggcttttgtg
tatggttcaagtgggaaagaagttgatagcattgagaagcttaaagctacaatatctcca
tttgttcatgttcacaaaggtagcattcttcagcaaagtcttcctgggttgagagagtgt
gcagttcttttacatccatcccaactacagatggaaattattaaaactttacaaccttct
gccaacactttcaagtttgagcacaaggtggcattggtttccgtgcacccatctttgctc
ttacagtgtaaagaaacatctgtcagtgatccgaatgtgctagagcagcataggcttgat
tcttatcaaggtgtgaagacaaggttcattatggaactaattcgcctctgtgtggctaca
aaagaaaaggtccttatatttagtcagtatattaaccctttggagttaatcaaggaccag
ctgaaatcaattttcaattggcacgagggaagggaagttctccaaatgcatggcacacta
gaacagagatgccggcaaaagtttataggaattttcaatgactccaggagtgaagctaaa
gtaatgttggcatcaataaaatgctgttcagaaggaataagcttaattggagcttcaaga
gttgttttgatagacgttgtttggaatccatccgtggagaggcaagccataagcagggct
tatagatttggtcaagagaaggtcgtttatacatataatcttatggtatctgggacaaca
gagggggagaaatactgtagacaagctgagaagaaccgtttatctgagttggttttctcc
tctggtggcaaggaaagagaagaaaagaatcatgctacaaccttcagcgatgtcatcttg
gaggagatggttgcgcatggaaagctcaaagatatgtttgacaggatcatttaccagcca
aaagagacgaatttagtcgaaaaaatctctatccctcgccccataccaggatcctcttag
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integrated database retrieval system
