Diospyros lotus (date-plum): 127803040
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Entry
127803040 CDS
T10632
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
dlt Diospyros lotus (date-plum)
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dlt03016
]
127803040
Enzymes [BR:
dlt01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
127803040
Transfer RNA biogenesis [BR:
dlt03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
127803040
Prokaryotic type
127803040
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
GAP1-N2
Motif
Other DBs
NCBI-GeneID:
127803040
NCBI-ProteinID:
XP_052195007
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All DBs
Position
1:complement(32942499..32950327)
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AA seq
541 aa
AA seq
DB search
MAVCSLRFPFPQWLGNQASTLRLPKPTTPRLLLVVARASLSTAPLPPSLSPATAQTLAPP
PENQTVQPTAIKWTPFRKKKVVMRVGYVGTDYRGLQMQRDEHSLSTIEEELENAIFRAGG
IRDSNYGDLNKIGWARSSRTDKGVHSLATMISLKMEIPENAWKEDLNGVSLANYVNAFLP
NNIKVFSILPSRRSFDARRECNIRKYSYLLPAEVIGIKETFTASEIDYHISDLNEILSSF
EGEHPFHNYTIRSKYRKPIPAKLLSRKDRRERYPERHESDAEEILEVDDLAVRDVEGKND
GSSQIQFLVSDNHLSESWNDNGNGMKGRDAHLAIKARWLHEPDEKDKLSSSHFRKIYRCC
CGKLEQFLGINYVEVSIFGESFMLHQIRKMVGTAVAVKRNLLPRDILKLSLAKFSRIVLP
LAPSEVLILRGNNFQLRNQPGNVTRPEMITLVESEEILKPVDEFYNSIVLPQIAKFLVPS
KSPWKEWVETLDANTSIPEAELDEVRNAWELWNEKFQQTRKGAASKLRTKQLKEDGRRIS
I
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggccgtctgttcgcttcgatttccattcccacagtggctgggaaaccaagcttcgact
ctccggttaccaaagccgacaacaccgcggctacttctcgttgttgctcgtgcttcatta
tcgacggcgccgctgcctccgtctttgtcgcccgccaccgctcaaacattagctccgccg
cctgaaaaccagacggtgcagcccaccgccatcaaatggactcctttccgcaagaagaaa
gtcgtaatgcgcgtcggttacgtcggtaccgattacagaggtctgcaaatgcaaagagat
gaacactcgttatccaccattgaggaagaattggaaaatgctattttcagagctggtggc
attcgtgatagcaattatggggatttgaacaaaattgggtgggctagaagtagtcgaact
gataaaggagtgcattcattagcaaccatgatatccttaaaaatggaaatacctgaaaat
gcatggaaggaagacctcaatggcgtttctcttgcaaattatgtcaatgcttttcttcct
aacaatatcaaagttttcagcattttgccttcaagaaggagctttgatgctagaagggaa
tgtaatattcgcaaatattcttacctccttccagctgaagtgattggaattaaggaaacc
ttcactgcatctgaaattgattatcatatatcagacctgaatgaaatactgagttctttt
gagggagaacatccttttcataattatacaatacgatccaagtatcggaaaccaatacct
gcaaaactgttatcaagaaaggatagaagagaaagataccccgagagacatgaaagtgat
gcagaagaaattcttgaggtggatgatttggcagtgagagatgttgagggaaaaaatgat
ggttcatcacaaatacaattcctagtttctgacaatcatctatcagaaagctggaatgac
aatgggaatggtatgaagggccgagatgctcatttagccattaaggccagatggttacat
gaacctgatgaaaaggacaagcttagttcttcacattttagaaagatttaccggtgctgc
tgtggaaaactggaacaatttcttggaataaattatgtagaagtttccatatttggagaa
tcattcatgctgcatcaaatccgtaagatggtaggaactgctgtggctgtaaagcgtaat
ttactccccagggatattctaaagttgtcactggccaagttctctcgtattgttctgcct
cttgccccatctgaagttctcattttgaggggaaataattttcagctaagaaaccaacct
ggcaatgtaacaaggcctgaaatgataacattggttgaatctgaagaaattctgaagcca
gttgatgagttctacaattcgatagtgttgcctcagattgcaaaattcttagttccttca
aaatccccttggaaggagtgggttgagacattggatgcaaatacaagcatcccagaagca
gaactggatgaagtcaggaatgcatgggaactgtggaatgaaaagtttcagcagactaga
aaaggtgctgcatcaaagttgagaacaaaacagctcaaagaagatggcaggagaatatcc
atttga
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