Diospyros lotus (date-plum): 127803300
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Entry
127803300 CDS
T10632
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127803300
Spliceosome [BR:
dlt03041
]
Complex C
Other components
Step II factors
127803300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_22
HA2_C
AAA_19
IBR_1
KH_SLS1_1
zf-RING_UBOX
HA2_N
ATPase
ResIII
ABC_tran
AAA_29
Helicase_RecD
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
127803300
NCBI-ProteinID:
XP_052195385
LinkDB
All DBs
Position
6:complement(16940542..16977560)
Genome browser
AA seq
1740 aa
AA seq
DB search
MNRAPPAASGGRGGRPPQRGVIQANSMSYQVRKPQFGGDYRGDRPKGSYHLQRFNFTLDL
RSPGGSFSREEVEDLVAGSKVKPDNVDIHSSGSVAARLCFQQWSDAFEATVYFWEVRLNG
GHLFKPVLVPSISCDMGKLRDRIRTLFVELVKQLMEGDLVQQWEKKRGVLMDEIAGVASA
HRKRHGVRQLLLNVFEEISKKKAALESEKHLIERRIAEFKFSMQCILNYLGVAPSVECSD
EELEVFKFSRHFEWVRLHCLIRRECRRLEDGLPIYAFRREILRQIYSQQVTVLIGETGSG
KSTQLVQFLADSGVAGNDSIVCTQPRKLAAVSLAQRVKEESFGCYLDNSVVSCPAYASAQ
QFNSKILFMTDYCLLQHYMKDNNLSGISCIIIDEAHERSLNTDLLLALLKNLLCQRDNLR
LIIMSATADSIQLAEYFFCCETFYVTGRSFPVDITYVPSATGSSSDSAGIASYASDVVRL
VTDIHRTEKGGTILAFLTSQMEVEWACEKFQAPNAVALPLHGKLSYEDQLCVFIDHPGKR
KVIFATNVAETSLTIPGVKYVVDSGMVKESKFEPGTGMNVLKVCSISQSSANQRAGRAGR
TEPGRCYRLYSEYDFDLMRPHQEPEICRVHLGVAVLRILALGIKDVQSFDFVEAPSATAI
DMAIRNLIQLGAVVLKNDELELTKDGLKLVRLGIEPRLGKIILECVNHHLGKEGVVLAAV
MANANSIFCRVGNEEDKLKSDCLKVQFSHHSGDLFTLLSVYKEWEGVHREKRNKWCWENS
INAKSMRRCEDTVFELETCLQSELNLIIPSYWLWDSQVSTEHDEHLKNAILSSLAENVAM
YSGYDQLGYEVALSGQHVQLHPSCSLLSFSQRPSWVVFGDILSISNQYLVCVTAFDYGYL
SNLCPQPLFDAPRMENCKLQLRVLNGFGCTLLKRFCGKSNSNLLNLVSRLRTACMDERIG
IEVNVEQNEVHLFASSQDMEKASNLVNDVLDFERKWLQNECVEKCLYHGGPSISPSVALF
GAGAEIKHLELEKRCLTVDVFYSDANAVDDKELLTFLEKSASGSICGVHKFTSTGQDSDE
KEKWGKVTFLSPDAAEKAAELNLVEYNGALLKIIPSQSTFGGDHKMFSFAAVRAKVYWPR
RYSKGRAFVKCDRQDVNSIVDDFSNLVIGGNYVRCEASMKYMDSVMISGLDRGLSEDEIL
DILRTATDRKILDFFLLRGDAVENPACSACEQALLREISPFMPKKNPVGYFVRVQVFPPD
PKDVFMRALIMFHGSLHLEAAKALEQIEGKVLPGCLPWQKIKCQRLFRSSVSCPAYVYSV
IKEQLEYLLARFRHRKGAECYLEKNENGSYRVNISANATKTVADLRRPLEQLMRGRTIEH
AGLTPTVVKLLFSRDAIMLMKSLQRETGTYILFDRHTLSVKIFGALKKIDVAQHRLIQSL
LTLYERKQLEIRLRGGGMPPDLMKEVVKKFGPDLQGLKEKFPGVEFTLNSRRHVISISGK
KDVKQKVEDEVYEIAQMSTALAQRVDNKDACPICLCEVEDGYKLEDCMHVFCRLCLVEQC
ESAIKSQDSFPMRCMHEGCGALILLTDLRSLLSAEKLEELFRASLGAFVALSKGSFRFCP
SPDCPSVYRVAEPGTFGKPFVCGACFVETCNRCHMEYHPFLSCEKYREFKEDPDSSLRDW
CKGKEHVKNCPVCGSTIEKTDGCNHIECRCGKHICWVCLEFFGSSDDCYGHLRSVHQAFV
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgaacagagcccctccggcggcctccggcggccgtggcgggcgtccaccgcaaagaggc
gttattcaggcgaattccatgtcataccaggtgcggaagccccagttcggtggggactat
cgcggcgatcgacctaagggttcctaccacctgcaacgcttcaatttcactctcgacctt
cggtcgcccggtgggagtttcagcagggaggaggttgaggatttggttgccggaagtaag
gtcaagcctgataatgtcgacattcattcctccggttctgtcgctgcgaggttgtgcttc
cagcagtggagtgacgcgtttgaagcgacggtgtatttttgggaagttcgactcaacggc
ggtcatttattcaagccggtgctcgtgcctagcatttcctgcgatatgggcaagctaagg
gaccgtataagaactctatttgtggagcttgtcaagcagttgatggaaggggatttggta
cagcagtgggagaagaagcgtggggttttgatggacgagattgccggcgttgcctctgcg
catagaaagcgtcacggggttcggcagcttctgctgaatgtttttgaggagatttcaaaa
aagaaggcagctttagagtccgagaaacatctgatagagaggaggatcgcagaatttaaa
ttttctatgcagtgtatccttaactatcttggtgtggcaccgtcggtcgaatgcagtgat
gaggagttggaggtgtttaagttcagcagacactttgaatgggtccggcttcattgtctg
atcaggagggagtgcaggcggttggaggatggcttgccaatttatgcctttcgccgggaa
atacttcgacaaatctatagccaacaggtaacggtattgattggagaaactggttcaggg
aagagtacccaattggttcagtttcttgccgattcaggagtggctggtaatgactccatt
gtatgtactcagcctcgcaaacttgcagctgtctccttggctcaaagagttaaagaggaa
agttttggatgctatctagataattcagtcgtatcttgtccagcatatgcatctgctcag
cagtttaattccaagatattgttcatgacagactactgcttgttgcagcactatatgaaa
gataacaatttatcagggatttcatgtatcattattgatgaggcacatgaaagaagctta
aacaccgatctccttttagcattgttgaaaaatttactttgtcagagggacaatcttagg
ctgatcataatgtctgcaacagctgattcaatccagcttgcagagtactttttttgttgt
gagaccttttatgtcacaggcagaagctttccggttgacataacctatgtccccagtgca
actggaagcagttctgattctgctggcattgcttcatatgcttctgatgttgtgaggttg
gtgactgatatccatagaacagagaaaggtgggacaattcttgccttcctaacttctcag
atggaagtagaatgggcatgtgaaaagttccaagctcccaatgctgttgcactaccctta
cacggaaaactttcttatgaagatcagctttgtgtttttattgaccatccaggcaaaaga
aaagtgatatttgccacaaatgttgctgagacatcattgacaattccaggggtgaagtat
gtagttgattctggcatggtgaaagagagtaagttcgaacctggcactggtatgaatgtg
ctcaaagtttgcagtatcagccagagttctgcgaatcagcgagctggtcgtgctgggagg
actgaaccgggaaggtgttataggctttattctgaatatgattttgatttgatgcgtcct
catcaggaacctgagatttgtagagttcatcttggtgtagcagttctaaggattcttgct
ttgggcataaaagatgtacaaagttttgattttgttgaagcaccaagcgcaactgcaatt
gatatggccattagaaatcttattcagctgggcgctgttgtattgaagaacgatgaattg
gaattaactaaggatggactgaaattggttaggttgggtattgaaccacggctgggcaaa
attattcttgaatgcgtcaatcaccacttgggtaaagagggtgttgttcttgctgctgtc
atggcaaatgccaatagcatattttgcagagttggtaatgaagaagacaagcttaaatct
gattgcctcaaggtgcaattttctcatcactctggtgacctgttcactctgctctctgtt
tacaaagaatgggaaggtgtgcatcgagaaaagagaaataagtggtgttgggagaatagc
atcaatgccaaatccatgcggagatgtgaagacacagtctttgaattggaaacttgcctt
cagagtgagctcaatctcattattccaagttactggctttgggattcgcaggtttctact
gaacatgatgaacatttgaaaaatgctatactatcttcccttgcagagaatgtagctatg
tattccggctatgatcaacttggatatgaggttgcattatctggccagcatgttcagttg
cacccttcatgttcattgctaagttttagtcaaaggcctagttgggtagtttttggtgac
attctatcaatatccaatcaatatttggtctgtgtgactgcttttgattatggatatttg
tctaacctttgtcctcaaccactatttgatgccccaagaatggagaattgcaagcttcag
ttgagggttttgaatgggtttggctgtacattactaaaaagattctgtgggaagtccaac
agcaatctccttaatcttgtttctcgcttaagaacagcttgtatggatgaaaggattggc
attgaggttaatgttgagcagaatgaagttcacttatttgcctcttcacaagacatggag
aaggccagtaaccttgtaaatgatgttttggattttgaaagaaaatggttgcagaatgag
tgtgtggaaaaatgcttatatcatggaggacctagtatctcaccttctgttgctttattt
ggagctggtgcagagataaaacatctggagcttgaaaagagatgtttgactgttgatgtg
ttttattcagatgcgaatgctgttgatgataaggagcttttgacatttttggagaaaagt
gcctcaggtagtatttgtggggtgcacaaatttacaagcactggacaagacagtgatgag
aaggaaaagtggggcaaggtaacatttcttagtcctgatgctgctgagaaagctgctgag
ttgaatctagttgaatataacggtgctttgttgaaaataattccttcacagagcacattt
ggaggtgatcataaaatgttttcatttgctgctgttagagcaaaagtatattggccgcgt
aggtacagtaaggggcgggcttttgtcaaatgtgacaggcaggatgttaattctattgtt
gatgatttctctaacttggtaattggaggaaactatgtacgctgtgaagctagcatgaag
tacatggacagtgttatgataagtggacttgacagaggactctcagaggatgaaatttta
gatatattaagaactgcaacagataggaagattttggacttcttcctgctgaggggagac
gctgtggaaaatcctgcatgtagtgcttgtgagcaagcacttctcagagaaatctccccc
tttatgcctaagaagaaccctgttggttattttgtacgtgtccaggtcttcccacctgat
cctaaggatgttttcatgagagccttgatcatgttccacggaagtctacatttggaggca
gcaaaagctctagagcaaattgaagggaaggtattgcctggatgtcttccgtggcagaag
ataaagtgtcagcggttgtttcgtagctcagtatcctgtcctgcatatgtctattctgtt
atcaaggaacaattggaatatctccttgcaagattccggcatcgaaagggtgctgaatgt
tatctagagaaaaacgagaatggttcctatcgggtaaatatatctgccaatgctacaaaa
actgtggcagatttgagaagacctctagagcagctcatgagagggaggactatagagcat
gccggcctcactccaacagttgtaaaactgttgttttctagggacgccatcatgctcatg
aagtcacttcagcgagagacaggaacctacattctttttgacagacacaccctaagtgta
aagatatttggcgctctgaaaaagattgatgtggcacaacatagattaattcagtccctt
ctgaccctatatgagagaaagcaacttgaaatccgtcttcggggtggaggtatgccccct
gacctgatgaaggaagtggtcaagaagtttggcccggatctgcagggcctaaaagaaaaa
tttcctggtgtggagttcaccctcaattctcgacgccatgtcatctcaatttctggtaag
aaagacgtaaagcaaaaagttgaagatgaagtttatgagattgcacagatgagtactgcg
ttagcacagagggtggacaataaagacgcctgcccaatttgcttgtgtgaagtagaggat
ggttacaagcttgaagactgtatgcatgttttttgccgcttgtgcttagtggagcagtgt
gagtctgccatcaaaagccaggacagttttcccatgcgctgtatgcacgaggggtgcggg
gctctcattttgcttactgacttgaggtctctattatcagccgagaagttagaggagctt
ttcagagcttctcttggggcatttgtggcactgagtaagggttctttcaggttctgccca
tcgcctgactgcccttcagtttacagggtagcagagcctggtacattcgggaagccattt
gtgtgcggggcatgttttgtggagacgtgtaaccggtgtcacatggagtatcacccgttc
ctgtcatgtgagaaataccgtgaattcaaggaagatccagattcgtcgctgagggattgg
tgcaagggcaaagaacacgtgaagaactgcccggtgtgcgggtctacaattgagaagaca
gatggttgcaaccatattgagtgtagatgcgggaagcacatatgctgggtttgtctggaa
ttctttgggagcagtgatgattgctatggccatttgaggtctgtacaccaggcctttgtt
tag
DBGET
integrated database retrieval system
