Diospyros lotus (date-plum): 127803511
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Entry
127803511 CDS
T10632
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03013
Nucleocytoplasmic transport
dlt03015
mRNA surveillance pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127803511
09122 Translation
03013 Nucleocytoplasmic transport
127803511
03015 mRNA surveillance pathway
127803511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127803511
03041 Spliceosome [BR:
dlt03041
]
127803511
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127803511
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127803511
Spliceosome [BR:
dlt03041
]
Complex C
Other components
EJC/TREX
127803511
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127803511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
127803511
NCBI-ProteinID:
XP_052195736
LinkDB
All DBs
Position
1:complement(37185995..37194831)
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKENDAYEEELLDYEEEDEKVPDSAAAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIRIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacgaaggagaacgatgcttacgaggaggagcttcttgactacgaggaagag
gacgagaaggtccccgactccgcggccgccaaggtcaacggcgaatccgccaaaaagggt
tatgttggaattcacagctccgggttcagagattttcttttgaagccagaactgctgcgg
gctatcgtagactctgggtttgagcatccttctgaagtgcaacatgagtgtatccctcaa
gcaatattgggcatggatgttatttgccaagcaaaatctgggatggggaagactgctgta
tttgttctgtcaacattgcagcaaattgagcctattgctggccaagttgctgcccttgtt
ctatgccatacaagggaattagcttatcagatctgccacgagtttgagaggttcagcact
tatttaccagatatcaaggttgctgtattctatgggggtgttaatatcagaattcacaag
gatttattaaagaatgaatgccctcacattgttgttggaacacctggaagaatattggca
cttgctcgagacaaggatctttctcttaagaatgtgaggcactttattcttgatgaatgt
gacaagatgcttgagtcacttgacatgaggagagatgtgcaggagatattcaagatgacg
cctcatgataagcaagttatgatgttctcagcaacactcagcaaggaaatccgtcctgtt
tgcaagaaatttatgcaagatccaatggaaatttatgtggatgacgaggccaagttgacc
cttcatggtcttgttcagcactacatcaaattgagcgagctggagaaaaaccgcaaattg
aatgaccttcttgatgcattggatttcaatcaagttgttatatttgtcaagagtgtaagt
agagctgcagagttgaacaagctgctggtggagtgcaattttccatccatttgcatccac
tctggcatgtcgcaagaagaaaggttgacacgctacaagggcttcaaggaagggcacaag
aggatacttgtggcgacagatttagttggtaggggaattgacattgaacgggttaatatt
gtcatcaactatgacatgccagattctgcagatacttatctgcacagggtgggtagagct
ggcaggtttggtaccaaaggacttgcaatcacgtttgtctcatctgcatcagattctgat
gttctcaatcaggttcaggagaggtttgaagtggatataaaggagcttcctgagcagatt
gatacatccacatatatgccttcctag
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