Diospyros lotus (date-plum): 127804215
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Entry
127804215 CDS
T10632
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
127804215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127804215
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
127804215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
XFP_C
Motif
Other DBs
NCBI-GeneID:
127804215
NCBI-ProteinID:
XP_052196986
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Position
6:14753917..14774758
Genome browser
AA seq
987 aa
AA seq
DB search
MRTRNQSKRQSQSTGQEAKETAQQSLGFPESLNDGDLTAKSCQAVGKLLKRLNSRGSSAL
KKQDNYLRRCDFVGKNESKSEGTEDGGGGSNTGENGLEGESSDMLGSTRLKNKDDGKIFR
HSTPDTEEEMEESFWIDGSLPTFNSLNNDRSDSVNGVTIEFEGTPDSDKRKTIRRFSAED
KELAELVHKVHLLCLLGRGRLIDQACNDPLIQAALLSLLPTHLLRISEVTKLTVNALAPL
VDWFHNNFHIRSPSGTERSFHSALAFALETREGTAEEVAALSVVLFRALNLTARFISILD
VASLKPNSDKPESVNQDPSKTGRGIFLSSTLMVDRSNQVSVSTVKQSPSDGKDNMCGTSS
RGACRAANRKSSSNPCQSEDPTDVGKHIRSACKMQNDHSDVCLAKKSEQSKRKGDLEFEM
QLEMALSATAVGTSASSMSLDVNDINNNSPNLSSPAKRMKTIKQIESPPQGVSTAFGSRK
VGAPLYWAEVYCNGENSTGKWVHIDAVNSIIDGEQKVEAAAAACKKSLRYVVAFAGFGAK
DVTRRYCNKWYKIASQRVDPIWWDNVLAPLKELELGATGGLIHLKQDDSNEHEKEVAFKP
SDPPKCIRPDGAVSPAMQEMEMPKEPTKKFGAESSASNCYVATRSSLEDMELATRALTEP
LPTNQQAYKSHHLYALERWLTKYQIFHPKGPILGFCSGHPVYPRTCVQILHTKERWLREG
LQVKTNELPAKVLQRTMKLNKAQASEADVNGEEGCEGNILLYGKWQTEPLCLPCAVDGIV
PKNERGQVDVWSEKCIPPGTVHLRLPRVAPVAKRLEIDFAPAMVGFEFRNGRSIPVFDGI
VVCSEFKGAILEAYAEEEERREAEERKRSEAQAISRWYQLLSSIVTRQRLNKCYGDNSTS
QKSNEVPRAKDKLDVQFGGDKDDGHFPQCEDDQNILDRKLDAVSIAPTEEEHEHVFLTDD
QVVCLDEQSFTRTKRCRCGFSIQVEEL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccaggaaccagtccaagcggcagagccaatcgaccggccaagaagcgaaagaa
actgcgcagcaaagcttaggctttccggaatcacttaatgacggcgaccttactgctaaa
tcctgccaggctgtgggaaagcttctgaaacgactgaattcgcgaggctcctcggctttg
aagaaacaagataactacctccgccggtgtgattttgtaggcaaaaatgagagcaagtct
gagggaactgaagatggtggagggggaagcaacaccggagaaaatggcttagagggagaa
agtagtgacatgctggggagcactcggttgaagaacaaagatgatggaaaaattttccgc
cattccactccagatactgaagaagaaatggaagagtcattttggatagatggatctctt
cctactttcaattcgctaaacaatgatagaagtgattcggttaatggagtgactattgag
ttcgaagggacaccagattctgataaaaggaagaccatccgtagattttctgctgaagat
aaggaattggctgagcttgtgcacaaggttcatttactttgtttgcttgggaggggaagg
ttaattgatcaggcttgtaatgatcctctcattcaggctgccctgctttcacttctacca
acacacttactgagaatatcagaggtcacaaaattgacggttaatgctttggctcctctt
gtggattggtttcataataacttccatattagaagtccaagcggtacagagagatcgttt
cattctgcattggcatttgctctcgagactcgtgaagggactgcagaggaggttgctgca
ctgtctgtggtgctgtttcgagctctgaatcttacagccaggttcatttccattctggat
gtagcctccttgaagcccaattctgataaacctgaatctgttaatcaagatccaagcaag
acagggagagggatatttctatcttccactttgatggtggatagatcaaaccaggtttct
gtttccaccgtgaaacaatcaccatcagatggcaaggacaacatgtgtggaacttcctca
aggggtgcttgcagagctgctaataggaagtcttcaagtaatccctgtcaatctgaagat
cctacagatgttggtaagcatattagatcagcatgcaagatgcaaaatgatcactctgat
gtgtgccttgccaaaaaatctgagcaatccaagagaaaaggagatcttgagtttgagatg
cagctggaaatggctctttctgccacagcagttggcacttctgcgagcagtatgagcttg
gatgtgaatgacataaacaataactcacccaatctgtcttctcccgctaaaagaatgaaa
acaattaaacagatagaatctcctcctcagggagtctctactgcatttggatcaagaaaa
gttggagcacctctgtactgggcagaagtctattgtaatggagagaactccacaggaaaa
tgggtgcatattgatgctgtcaattctattattgatggagaacagaaagtagaagctgca
gctgctgcatgcaaaaagtctttgagatatgtagttgcttttgctggctttggagctaaa
gacgtgacccgcaggtactgtaacaaatggtacaagatagcgtcgcaacgagttgatcca
atttggtgggacaatgtactggcaccattgaaggagttggaattgggagcaactggaggt
ctgatccatttgaaacaggatgattcaaatgaacatgaaaaagaagtagcatttaaacct
tctgatcctccaaaatgtattagacctgatggtgccgtctcacctgcaatgcaagaaatg
gaaatgccaaaagagcctacgaagaaatttggagcagaatcttcagctagtaattgttat
gttgctactaggagctcacttgaggatatggagttggcgactagggcactaacggagcct
cttcctactaatcaacaggcttataaaagccatcacctttatgctcttgaaagatggctt
accaagtatcagatatttcatccaaagggtcctatattgggtttttgttcaggtcatcca
gtatacccaaggacttgtgtccaaatactccatacaaaagaaagatggctgcgcgagggt
ctgcaagtcaaaaccaatgagcttcctgcaaaggtgttgcaacgcacaatgaaactcaac
aaagcacaagcttctgaagctgatgttaatggtgaagagggttgtgaaggaaatattcta
ctttatgggaagtggcaaacagaacctttgtgtcttccttgtgctgtagatgggattgtt
cctaagaatgaacgaggccaagtggatgtgtggtcagagaagtgcataccaccgggaact
gtgcacttgaggttgccacgggttgctcctgttgcaaagaggttggaaattgattttgca
cctgctatggttggatttgaattcagaaatggtcgctctatacctgtctttgatggcatc
gtggtttgttctgagtttaagggtgcgatcttggaggcatatgcagaggaagaagaaaga
agagaggccgaggaaagaaaaaggagtgaagctcaagctatttctaggtggtatcagctt
ctctcatccatagttacgcggcaaaggttaaacaagtgttatggggacaattcaacatct
caaaagtccaatgaggttccaagggcaaaagataaacttgatgtccagtttggcggtgac
aaggatgacggtcattttcctcaatgtgaggacgaccagaacatattggatagaaagctc
gatgctgtgtcgatagcaccaacagaagaagagcacgaacatgtctttttgacagatgat
caggtcgtctgcttagacgagcagagttttacaaggacaaagcggtgtcgctgtggattt
tcaattcaagtggaggagttgtag
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