Diospyros lotus (date-plum): 127805864
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Entry
127805864 CDS
T10632
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127805864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127805864
03012 Translation factors [BR:
dlt03012
]
127805864
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127805864
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127805864
Translation factors [BR:
dlt03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127805864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
Dicer_dimer
ABC_tran
T2SSE
Motif
Other DBs
NCBI-GeneID:
127805864
NCBI-ProteinID:
XP_052198636
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All DBs
Position
7:11040220..11133415
Genome browser
AA seq
1200 aa
AA seq
DB search
MIGAGSLQFPIYTSFPKTLAETSRPQHHLTTAMKDRPPPSSYGAVYVPPHHRLRSVITTS
SNNLSSAISISDSNSKFVATQQNNSSSNPRPNPYPYLPPHQQQKRNSQSDWADELSEEGS
DRDIEPSSYPGASTSDNLDGWKWKLTTLLRSKDKHELVSRDKKDRRDFEQIAALASKMGL
YSHLYVKVVVVSKVPLPNYRFDLDDKRPQREVILPPGLQRRVDCHLGDHLSRKSGSVESF
WDNAFSRSSSSCSIATDEGLFEQPEPLPESKAAMEKIIWRRSMQLRSQQQTWQASPEGEK
MLEFRRSLPAYKEKDALLMSISQSQVVIISGETGCGKTTQIPQFILESEIESGRGALCNI
ICTQPRRISAMSVSERVAAERGEKLGETVGYKVRLEGMKGRDTHLLFCTTGILLRRLLID
RSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGKAP
TVHIPGFTYPVQTHFLENILEMTGYGLTPYNQIDDYGQDKAWKMNKQVPRKRKSQIASAV
EDALRAADFKDFSHETRESLSCWNPDCIGFNLIEYLLCNICEKERPGAILVFMTGWDDIS
SLKEKLQSHLILGDTSRVLLLACHGSMASSEQRLIFDEPKDGVRKIVLATNIAETSITIN
DVVFVIDCGKAKETSYDALNNTPCLLPSWISKVSALQRRGRAGRVQPGECYHLYPRCVYD
AFADYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIAALD
ENENLTVLGRYLTMLPMEPKLGKMLIAGAIFNCLDPILTIVAGLSVRDPFLTPLDKKDLA
EAAKAQFSRDYSDHLALVRAYEGWTDAERDLSGYEYCWKNFLSAQSMKAIDALRRELYSL
LKDTGLVDSNMSTCNSWSYDENLLRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYS
NSVNAREPRIPYPWLVFNEKIKVNSIFLRDSTAISDSMLLLFGGNISRGDADGHLKMLGG
YLEFFMKPDVAELYQSLRKELEDLIENKLLNPRMALMHQDLMVAVRMLLSDDRCDGRFVF
NRQVLQPSKPSITATPPAPLSRTESGPGGDNSKSQLQTLLTRAGYAAPTYKTTQLKNSQF
RATVDFNGMQIVGRPCNNKKQAEKDAAAEALEWLMGGSHRGHDYVEQMSIFLKKSKKDHR
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcgccggttctctccaattcccaatctacacctcattccccaaaaccctagca
gaaacctccagaccccaacaccacctcacgacggccatgaaggaccggccgcctccgtcg
tcttacggagctgtgtacgtcccaccgcaccaccggctgcgctccgtcatcactacttct
tctaacaatctgtcctctgcaatctccatttcggactccaactcgaagtttgtcgccact
cagcaaaacaacagctcctcgaaccctagaccaaatccctacccttacttgcccccccac
caacagcagaagaggaattcccagtcggattgggccgatgagttgtccgaagaaggttct
gatcgggacatcgagccttcctcctatcccggtgcttccacctctgataatctcgatggg
tggaaatggaagttaacaactcttttacgcagcaaagataaacatgagctggtctcaagg
gacaagaaggacagacgtgactttgagcaaattgcagccttggcaagcaaaatgggtttg
tatagtcatctatatgtaaaagttgttgtcgtgagtaaggttccactgccgaactacaga
tttgatttggatgataagcgtcctcagagagaggtgatcttgcctcctggtttgcaaagg
agagtggattgtcatcttggagatcatctttctcgaaagtctgggagtgtggaaagtttc
tgggataatgctttttcaagatcaagtagtagctgtagcattgccactgacgagggcctt
tttgagcaacctgagccactaccagagagtaaggctgccatggagaagatcatttggaga
agaagtatgcaattgcgcagccagcaacaaacttggcaggcatctccagaaggtgaaaag
atgctggaatttcgtagaagtctccctgcttataaagagaaggatgctttattaatgtct
atttcccagagtcaggtggttatcatttcaggtgaaactggttgtgggaagaccactcaa
atacctcagttcattttggaatctgagattgagtctggtcgtggagccttatgtaacatt
atctgtactcagcctaggcgaatatctgctatgtctgtttcagaaagagttgctgctgag
aggggagagaaattgggtgagacggttgggtataaagtccgactcgagggtatgaaaggg
agagacacccatcttctcttctgcaccactggcatcttgttgagaagattactaatagac
agaagcttgaagggtgtgactcatgttattgttgatgagatccatgagcgtggaatgaat
gaagattttctacttattgtcctcaaagatcttcttcctcgtcgaccggagctaaggctg
attttgatgagtgcaactttagatgctgagcttttctcctcgtactttggcaaggctcca
acagttcatataccgggctttacctaccctgttcaaactcatttcttggaaaatattttg
gagatgactggatacggattgacaccatacaatcaaatagatgattatggccaggacaag
gcatggaaaatgaacaaacaagttccaaggaagaggaaaagccaaattgcttcagctgtt
gaggatgcactcagagctgctgattttaaggattttagccatgagactcgagaatctctg
tcctgttggaatcctgattgtattggttttaacctcattgaatatctcctgtgcaatatt
tgtgaaaaggaaaggcctggagctattttagtttttatgacggggtgggatgacataagc
tctctgaaggagaaactccaatctcatcttatattgggagacacaagtcgggttttgttg
cttgcatgccatggttctatggccagttcagagcagaggttgatatttgatgagccaaag
gatggagtgaggaaaatagtactagctaccaatattgctgagacaagtataacaattaat
gatgtagtttttgttattgactgtggaaaggcaaaggagacatcatacgatgcactgaac
aacactccttgtttgcttccttcctggatttcaaaggtttctgctctgcagagaagagga
agagctggtcgtgttcaaccaggagagtgttaccacctttatcccagatgtgtatacgat
gcttttgcagattatcagttgccagaaattttaagaacacctttacagtccctttgcctg
caaatcaaaagtttgaaactgggaagtatttcggaattcctatctagggcattgcagtcc
ccagaattacttgcggttcaaaatgctattgaatatttaaaaatcattgcagctctagac
gagaatgaaaatttgactgttttaggacgctacttgacaatgttaccaatggagcccaaa
cttggaaagatgctaatagctggtgcaatattcaactgcctggatccaatattgacaatt
gttgctggtcttagtgtccgggatccattcctaacaccattggataagaaggatctagca
gaagcagcaaaagcacaattttcacgtgattacagtgatcaccttgctcttgtgcgggca
tatgagggctggacagatgctgaaagagacctatctggatatgaatactgctggaaaaat
tttctttctgcacaatcaatgaaagctattgatgctctgcggagggagttgtactccttg
cttaaggatactggccttgtcgacagcaacatgagcacctgcaattcatggagttatgat
gagaatctcctacgtgcagttatttgctatggcctgtatcctggaatatgttctgttgtg
cataacgagaagtcattctctttgaaaacaatggaggatggtcaggttcttctgtattct
aactctgtcaatgctcgagaacctaggattccttatccatggttagttttcaatgagaag
atcaaagtgaactccatttttctccgggattcaacagccatctctgattcaatgctgctc
ctattcggtggaaacatatccaggggggatgctgatggccacttaaaaatgctaggagga
tacttggagttcttcatgaaacctgacgtggcagaattatatcaaagcttaaggaaagag
ctcgaggacttaattgagaacaaactgttgaatcctaggatggctcttatgcatcaagac
cttatggtagcagtaaggatgctgctctcagatgatcgatgtgacggcagatttgtgttc
aatcgtcaggtgcttcagccttcgaagccatctattactgccacacctcctgccccgctt
tcaagaactgagagtggtccagggggtgataattcaaagagtcaactccaaacgttgctc
acgcgggcaggttatgctgcacccacctacaagacaacacaactaaagaacagccagttt
cgagccactgtggatttcaatgggatgcagatcgtgggacggccttgcaacaacaagaaa
caagcagaaaaagatgcagcggccgaggctctggaatggcttatgggtgggtcacataga
ggccatgattatgtagaacagatgtcgatatttctgaagaagagcaagaaagatcatcgt
tag
DBGET
integrated database retrieval system
