Diospyros lotus (date-plum): 127806013
Help
Entry
127806013 CDS
T10632
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127806013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127806013
03016 Transfer RNA biogenesis [BR:
dlt03016
]
127806013
Enzymes [BR:
dlt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
127806013
Messenger RNA biogenesis [BR:
dlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
127806013
Transfer RNA biogenesis [BR:
dlt03016
]
Prokaryotic type
tRNA degradation factors
127806013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
127806013
NCBI-ProteinID:
XP_052198911
LinkDB
All DBs
Position
7:136323..214384
Genome browser
AA seq
974 aa
AA seq
DB search
MLANPSFHGGGPACPTGLARFTYSDRYTLSLSSSIGPFRILPKTTLVLPSSPYSFSLSLN
LPRKGIIRRSSSARFHLKSSGESEILESETHSNTAQYCQPHSVKIPVGDRHILVETGHMG
RQASAAVTVTDGETIVYTSVCLADVPSEPADFFPLSVHYQERFSAAGRTSGGFFKREGRT
KDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSPDSMAVTAAGIAIALSEVP
NTKVVAGVRIGLVNDKFIVNPTTKEMEESELDLLLAGTDSAILMIEGYCNFLPEEKLLQA
VEVGQVAVQGICNEVEALARRCGKPKMLDAIKLPPPELYRHVEEIAGTEFVNVLQIKNKI
PRRKAISSLEEKVLTILTETGYVSKDEAFGATEAVPDLFEDEDEDEEVVVDGEVDEGDVH
IKPVSRKSTPLLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRAASEIRLIDSRCGLLP
RAHGSALFTRGETQSLAVVTLGDKQMAQRIDNLEGADEFKQFYLQYSFPPSCVGEVGRMG
APSRREIGHGMLAERALEPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAG
VPVKCRIAGIAMGMVLDTAEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMD
VKVGGITLPVMRHALQQARDGRKHILDEMSKCSPPPSEKLSKYAPLIHVMKVKPEKINLI
IGSGGKKVKSIIEETGVEAIDTRDDGMVKITAKDLSSLEKSKAIISNLTMVPTVGDIYRN
CEIKSVAPYGAFVEIAPGLEGLCHISELSANFLAKTEDAFNVGDRVDVKLIEMNEKGQLR
LSHRALLADMHPEKPNLKQRASGLTKESIASEKAPDKVTPKKVVNVQKDGLAEGKTEQST
RKSSSVKQTSPLKGHLGEGNLLKEPKEKIVKRFVKSTKDGASTVKEKPTTSSSEAVSSFG
ETKSILVDGDAKVR
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgttagcaaaccctagcttccatggaggaggacctgcttgtcctactgggctcgctcgg
ttcacgtactcggatcgctacacactttctctctcctcttccattggccctttccgtatt
cttcccaagacgaccctggtgttaccttcctccccttattcattttctttatcactcaat
ctaccaagaaaaggaattattagaagaagctcctctgctcggttccatcttaagtcttcc
ggcgaatccgaaattttagagtcagagacccatagcaataccgcccaatattgtcagccc
cactctgtcaaaattccggttggcgacagacatatattggttgagacaggtcacatgggg
agacaagctagtgcagctgttacagtaacagatggagaaactattgtctatacatctgtt
tgtttggccgatgttccgagtgagcctgctgattttttccctctttctgtacattatcaa
gagcgtttttcagcggcaggtcgaacaagtgggggttttttcaaacgggaaggaaggaca
aaagatcatgaggttcttatttgtagattgattgataggcctctgcgtccaaccatgctt
aagggattctatcatgaaactcagatactatcttgggtcttgagctatgatggtttgcac
tctcctgattccatggcagtcactgcagcaggaatcgcaatagcactttctgaagtgcca
aatacaaaagttgttgcgggagttcgaattggtcttgttaatgataagtttattgtgaat
ccaacaacaaaagagatggaagagtctgagttggatttgttgctagctggtacggacagt
gcaattttgatgatagagggttactgcaatttcctccctgaggagaagttactgcaagca
gtagaagttgggcaggttgcagtgcaaggaatttgcaatgaggtcgaggctttagccaga
aggtgtgggaaaccaaaaatgcttgatgccatcaaattaccaccccctgaactatatagg
catgttgaagaaattgctggtacagaatttgtcaatgtgcttcaaattaagaacaaaata
cctagaagaaaggctatctcatcattggaagagaaagttttgactatactcacagagaca
ggttatgttagtaaggatgaggctttcggagctactgaggcagtaccagacttgtttgag
gatgaagatgaagatgaagaagtggttgtagatggtgaagttgatgaaggtgatgttcac
ataaagccagtttcacgaaaatctactcccttgttattctccgaggtagatgtgaagttg
gtattcaaagaagttacatccaaattcctacgcaaacgcattgtcgagggagggaaaaga
agtgatggacgagctgcatctgagatacgattgattgactcaagatgtggattacttcct
agagcacatggaagcgctcttttcacacgtggggaaacacagtcgcttgctgttgttact
cttggtgataaacaaatggcgcaaagaattgacaaccttgaaggtgcagatgaatttaag
caattctatcttcagtactcttttcctccatcatgtgttggggaagttgggcgaatggga
gcacccagtagaagagaaattggtcacgggatgcttgcagagagagccctcgaacctatt
ttaccttctgaagatgatttcccttatacaatacgtgttgagagtaccatcactgagagc
aatggctcttcaagcatggcctctgtttgtggaggatgcttagcgttgcaagatgctggt
gtccctgttaagtgccgtattgctggtattgcgatgggcatggttttggataccgcggaa
tttgggggagatggaacacctctcattctttctgacatcactggatctgaagatgcatcg
ggagacatggatttcaaggttgctggaaatgaagatggtgtaacggcatttcagatggac
gtaaaggttggaggaattactttaccggtcatgaggcatgcactccaacaagcaagagat
ggccggaagcatattcttgatgagatgtcaaaatgctcaccacctccttcagaaaagctt
tcaaaatatgctccattgattcatgttatgaaggtgaagccagagaaaatcaaccttatt
attggttctggtgggaagaaggtgaagagtattattgaagaaactggtgtagaagctatt
gacacaagagatgatggaatggtgaaaattactgccaaggatctgtccagtctagagaaa
tcgaaagccattatcagcaatctgacaatggttcccactgttggtgatatctacagaaac
tgtgagatcaaatcagtggccccttatggagcttttgttgagatagcacctgggcttgag
ggactttgtcatatcagtgagttgagtgcaaatttcctggcaaaaactgaagatgctttc
aatgtcggagaccgtgtcgatgtgaagcttattgagatgaatgaaaagggacaacttcgc
ctaagccaccgtgctctacttgcagacatgcatccagagaaacccaatttgaagcaacga
gcgagtgggcttaccaaggaaagcatagcttccgaaaaagctcctgataaggttacacct
aagaaagttgtgaacgtgcagaaggatggtttagcagaagggaaaacagaacagtccact
cgtaaaagtagcagtgtcaaacaaacaagcccccttaaaggtcatctgggtgagggcaat
ctactgaaggaacctaaagagaagattgttaagagatttgtcaaatctacgaaggatggt
gcctctaccgtcaaagagaagccaacaacgagcagcagtgaagctgttagcagttttggt
gaaaccaaaagtatcttggttgatggagatgccaaagtcagatag
DBGET
integrated database retrieval system
