Diospyros lotus (date-plum): 127806102
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Entry
127806102 CDS
T10632
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127806102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127806102
03041 Spliceosome [BR:
dlt03041
]
127806102
03009 Ribosome biogenesis [BR:
dlt03009
]
127806102
03016 Transfer RNA biogenesis [BR:
dlt03016
]
127806102
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127806102
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127806102
Spliceosome [BR:
dlt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127806102
Complex C
U4/U6.U5 tri-SnRNP related factors
127806102
Ribosome biogenesis [BR:
dlt03009
]
Eukaryotic type
Pre-60S particles
Helicases
127806102
Transfer RNA biogenesis [BR:
dlt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127806102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127806102
NCBI-ProteinID:
XP_052199082
LinkDB
All DBs
Position
7:complement(37313681..37328930)
Genome browser
AA seq
994 aa
AA seq
DB search
MEESPLGKRKAPENSLEVSETPKEEYESKKRNLARTCLHEVAAPGGYTSSKDGSIHGTLN
DPVYNGKMAKTYPFTLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPLKALSNQKYRELTQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQPC
HVVYTDFRPTPLQHYVFPMGGAGLYLVVDENEQFREESFMKLQDTFAKQKLGGGNKSANA
KGSGRSARSGNASGGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMAKLDFNTQEE
KDVVEQVFQNAILCLSEEDRNLPAIELILPLLKRGVAVHHSGLLPIIKELVELLFQEGLV
KALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICI
IMIDEQMEMNTLKDMVLGRPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQY
EKALPDIGKKVSNLEEEAALLDSSGEAEVAEYHKLKLDMVQLEQKMMAEITRPERVLYFL
LPGRLVKVREGGTDWGWGVVVNVVKKPPAPLGSLPAALSSSRGTSYIVDTLLHCSLGSSE
NGSRPKPCPPRPGEKGEMHVVPVQLSLISALSKLRISIPSDLRPLEARQSILLAVQELEK
RFPQGLPKLNPVKDMGIEEPEFVELVNQIEELEKKLFRHPLYKSQDETQIRSFQRKAEVN
HEIQQLKTKMRDSQLQKFRDELKNRSRVLKRLGHIDADGVVQLKGRAACLIDTGDELLVT
ELMFNGTFNDLDQHQIAALGSCFIPGDKSSEQIQLRAELAKPLQQLQDSARRIAEIQREC
KLEVNVDEYVEAAVRPYLMDVIYCWSKGASFAEVIQMTDIFEGSVIRLARRLDEFLNQLR
AAAHAVGELDLEKKFAAASESLRRGIMFANSLYL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatcgcctcttggaaaacggaaggcgcctgaaaatagtttggaggtctcggaa
acgcccaaggaagagtatgaatccaaaaagcggaacttggcacgaacatgcctacacgag
gttgctgctccaggtggatacacatcatccaaagatgggtccattcacggcacactcaat
gatcctgtttacaatgggaagatggcaaaaacctatccttttactcttgacccattccaa
caagtgtcagttgcatgtttggaacgcaatgagtcggttttggtttctgcacatacttca
gctgggaaaactgctgttgctgagtatgccattgcaatggcctttagagataagcaaagg
gttatatacacttcaccactgaaagctctaagcaaccagaagtatagagaactaacccag
gagttctctgatgttgggttgatgacaggtgatgttacactgtcaccgaatgccagttgt
ttagttatgacaacagagattctcaggggaatgctttacaggggttctgaagtgttaaaa
gaggttgcctgggttatatttgatgaaatacattatatgaaggatcgggaaagaggggtt
gtttgggaagagagtattatattcttgccgccagctattaagatggtcttcctttcagca
acaatgtccaatgctactgagtttgctgagtggatatgtaatttgcacaaacagccatgt
catgttgtatatactgattttcgaccaacacctttgcagcactatgtgttccctatgggt
ggggcaggattgtatcttgttgtggatgagaatgagcagtttagggaggaaagttttatg
aaactgcaggatacctttgcaaaacagaagctgggtggtggtaacaagagtgcaaatgct
aaagggagtggcagaagtgctaggagtgggaacgcctcaggtggttctgacatatacaag
attgtcaagatgatcatggaaaggaaatttcaaccagttataattttcagctttagtaga
agagaatgcgaacaacatgcgatgtctatggcaaagctcgattttaatacccaagaggag
aaggatgttgtggagcaggttttccaaaatgccatactctgcttaagtgaagaagataga
aacttacctgctattgagctgatactgccactgcttaaaagaggcgttgctgttcatcat
tcaggacttctgcctattattaaggagttggttgaacttctcttccaagaaggccttgta
aaagccctttttgcaacagagacatttgctatgggtttgaacatgcccgcaaaaactgtt
gtttttaccagtgtaaagaaatgggatggagacagtcatcgttatatcggatctggtgag
tatatccagatgagtggaagagctggacgtcgtggcaaagatgagcgaggtatctgtatt
attatgattgatgaacagatggagatgaataccctcaaggacatggtcttgggtagacca
gcgccattggtcagtacttttagactgagctattattcaattttgaacttaatgagccgc
gctgaaggacagtttactgctgagcatgttatcaagaattcatttcatcagtttcagtat
gagaaggctttacctgatatagggaaaaaagtttcaaaccttgaagaggaagctgccttg
cttgattcctcaggagaggctgaggttgctgaatatcataagttaaagcttgatatggtc
cagcttgagcagaagatgatggcagagataactaggcctgaaagagttctttattttctt
ctccctggtaggctggttaaggtgagggaaggtggcacagactggggttggggagtcgtt
gttaacgttgttaaaaagcccccagcaccactaggcagtttgcctgctgcactatcttct
tcacgtggtactagctatattgtggatactttacttcattgctctcttggttcaagtgaa
aacggttctcgaccaaaaccatgcccaccccgtcctggagaaaagggtgagatgcatgtg
gttcctgttcagttgtctctaatttctgctcttagcaaactccgaatatcaattccttct
gatcttcggccattagaagccaggcaaagtatacttcttgccgtacaggagcttgaaaaa
cgtttccctcaaggccttcctaagcttaatcctgtgaaggatatgggcattgaagagcca
gaatttgttgagttggtcaatcaaattgaagaactggagaaaaaattatttcggcaccca
ctttacaagtcccaagatgaaactcagattagaagttttcagaggaaagcagaagtgaat
catgaaattcaacaactaaaaacaaaaatgcgagattctcagcttcaaaagttccgtgat
gaacttaagaatcgttcacgggttcttaaaaggcttggccatatagatgctgatggtgtt
gtccagctaaagggacgggcagcctgcttgatagatacaggagatgaactccttgttaca
gaattgatgttcaatggtaccttcaatgatcttgatcagcatcagatagcagctcttgga
agttgcttcattccaggagataaatcgagcgaacaaatacagttaagagcagagcttgct
aaaccattgcaacagctgcaagatagtgcaagaagaatagcagaaattcaacgtgaatgc
aaattggaagtaaacgtggatgaatatgtggaggcagctgttagaccatacttgatggat
gtcatttactgttggtcgaagggagcatcttttgcagaggttatacaaatgactgatatc
tttgagggcagtgtaatacgacttgctagaaggcttgatgaatttttgaaccagctgcga
gctgctgctcatgccgtgggggaacttgatttagagaagaagtttgcagcagccagcgaa
agccttcgccgcggtattatgtttgctaattccttatatttgtaa
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