Diospyros lotus (date-plum): 127806653
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Entry
127806653 CDS
T10632
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03030
DNA replication
dlt03420
Nucleotide excision repair
dlt03430
Mismatch repair
dlt03440
Homologous recombination
dlt03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127806653
03420 Nucleotide excision repair
127806653
03430 Mismatch repair
127806653
03440 Homologous recombination
127806653
03460 Fanconi anemia pathway
127806653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dlt03000
]
127806653
03032 DNA replication proteins [BR:
dlt03032
]
127806653
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127806653
Transcription factors [BR:
dlt03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
127806653
DNA replication proteins [BR:
dlt03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
127806653
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
127806653
MMR (mismatch excision repair)
127806653
DSBR (double strand breaks repair)
HR (homologous recombination)
127806653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
TMEM219
zf-like
DUF223
Motif
Other DBs
NCBI-GeneID:
127806653
NCBI-ProteinID:
XP_052200030
LinkDB
All DBs
Position
7:25941874..25945071
Genome browser
AA seq
625 aa
AA seq
DB search
MPVNLTQNAISAINAGDVNSKPLVQVLDIKLIGNTQERYRFLISDGVSTQHAMLATQLND
RVKSGRVLKGSVVQLIDYICSTVQNRRIIVVLNMETIIPDCEIIGNPKMFVESDSVGQKP
VPDNNRGHTTAATSNNYLGAQNAGNDMQNFRTTVQPAYQPPPSYKNRGAIMKNEAPACII
PIAALNPYQGRWAIKARVTAKGDIRRYNNARGDGKVFSFDLLDSDGGEIRATCFNAVVDR
FYDVIEIGRVYLISKGSLKPVQKNFNHLRNEWEIFLETTSTVDLCVEEDGSIPKQQFSFK
PISEIETAENNSIIDIIGVVLTVNPSVPILRKNGMETQRRILNLKDQSGRSVELTLWGDF
CNREGQRLQEIVNSGLFPVLAVKAGKVNDFNGKSIGTISSTQLFINPDSSEAHSLRVWFD
QGGKDTVSQSISRDTMPGGPKSEIRKTVSQIKDEGLGRSEKPDWVTVKATISFIKTDTFC
YTACPLMVGDRQCNKKVTKSGNSRWQCDRCNQEFEECDYRYLLQAQVQDHTGLMWVTAFQ
ESGEEILGCLAKELYFLKYEEQDDVKFAETIRSCLFTEYLFRLKIKEELYGDEQRVKITV
VRAEKVNYSGESRYLLGLISRAQPR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgccggttaatctgacgcagaatgcgatttcggccatcaacgccggagacgtgaactcg
aagcctctggttcaggtgctcgacattaagctcatcggcaacactcaggaacgctaccgt
tttctgatctcggatggagtctcgactcagcacgcaatgctggccactcagctcaacgac
cgagtcaagtctggccgagtcctcaagggctctgtcgttcagttgatcgattatatctgc
agcaccgttcagaatcgcaggattattgttgttctaaacatggaaactattataccagat
tgtgaaataattgggaatccaaaaatgtttgtggaatctgattcagtaggccagaaacca
gtacctgataataaccgtggacacacaacagcggctaccagtaacaattatctgggagcc
caaaatgctggaaatgatatgcaaaatttccgcaccactgttcaaccagcgtaccaacct
cctccaagctataaaaatcgtggggcgatcatgaagaatgaggcacccgcatgcataatt
ccaattgctgctctgaatccttatcaaggtcggtgggccatcaaagcaagagtaacagct
aaaggagacatccgccgttacaacaatgcccggggagatggaaaagtattctcctttgac
cttcttgactctgatggaggtgaaatacgggccacctgcttcaatgctgttgttgaccgc
ttctatgatgttattgagattggtagagtctatttgatatcaaagggtagcttgaaacct
gtacagaagaacttcaaccatctgagaaatgaatgggagatatttttggagacaacttca
acagttgacctttgtgtggaagaagatggttctataccaaaacagcaattctccttcaaa
cctatcagtgaaattgagacagctgaaaataattccatcattgacattattggtgttgta
ctaacagttaacccttcagtccctatcttgaggaagaatggaatggaaactcaacggaga
attctaaatctcaaggatcaatctgggcggagtgttgaattaactctatggggtgatttc
tgtaatagggaaggtcaaagactacaagaaattgtcaattctgggcttttcccggtttta
gctgtcaaagctgggaaagttaatgacttcaatgggaaatctataggaacaatttcttct
acccagctctttataaatccagattcttcagaggcccacagcctgagagtctggtttgat
caaggggggaaagatactgtttctcagtccatctctagggacactatgcctggaggacca
aaaagtgagattcgtaaaactgtatctcaaatcaaggatgaaggattgggaaggtcagaa
aaaccagattgggtgacagttaaggcaaccatatctttcatcaagacagatacattctgc
tacactgcctgccctttgatggttggtgataggcagtgtaataagaaagtgacaaagtca
ggaaactcacgatggcaatgtgacaggtgcaatcaagaatttgaggaatgtgattacaga
tacctccttcaagctcaagttcaggatcatacaggtttgatgtgggtcacggctttccaa
gaatcaggggaagagatcttaggttgcttggcgaaggagttgtacttcctgaaatatgaa
gagcaggatgatgtcaaatttgcagaaaccatccgcagctgtctcttcactgaatatctt
ttcagacttaaaatcaaagaggaactttatggtgatgaacagagggtgaaaattacagtt
gtcagggcagagaaggtgaactattctggagagagcagatacctgcttggtttgatctcg
agagcacagcctcgctga
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