Diospyros lotus (date-plum): 127807255
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Entry
127807255 CDS
T10632
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
dlt Diospyros lotus (date-plum)
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dlt03009
]
127807255
Ribosome biogenesis [BR:
dlt03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
127807255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_VPS8
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR54
Beta-prop_IFT122_1st
Beta-prop_LRRK2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
127807255
NCBI-ProteinID:
XP_052200913
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Position
8:complement(22280550..22290677)
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AA seq
452 aa
AA seq
DB search
MEPELVFASSSMDAGIGCWDLHSGAEGLRYRSCASAPHGLVSVGSRFLASSQLREPSSSS
GSVLYWSWNKPHVEVKSFPAEPINPLVSNMEGTYLVGGGVSGDIYFWEVNTGRLLKKWHA
HYRAVTCLVYCDGQSLLISGAEDGSVRVWSLVTIFDKTWMERAKHLHMYNFAEHTLRVTD
IAMGHGGPNAIIISASEDRTCKVWSLARGELLRNIVFPSIIDAIALDPVEYVFYAGGRDG
KIYIAALNAPDINNNYGMYILGSLADQSKAVTSLAFDVDGVLLISGYEDGMVRVWDTRTR
NIIRIFKHAKGPVNNILVMSSPLSLNPRMVLNSQSASVGRHGSTLAPPLEKYTSSADEIV
EIKTYLGGQSTCVEPLSGSYISAQIINNQIKELQQQGSSATDGLEVEQLKNDLSRSMQMA
QKWKKMYENLHQFCVNELMDGDQDEGDNGKST
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggaacctgaactggtgttcgcttcgtcgtcgatggacgccggcatcggctgctgggac
ctgcattccggcgccgagggcctccgctaccggtcgtgcgcctccgctcctcacggcctc
gtctctgtcggcagccgctttctcgcttcttctcagcttcgcgagccctcctcttcctcc
ggctccgtcctctactggtcctggaacaagcctcatgtggaagttaagagcttccctgca
gaaccaattaatccgcttgtttccaacatggaagggacttatttagttggaggtggtgtt
tctggcgatatatacttttgggaggttaacacaggtagactgcttaagaagtggcatgct
cattacagagctgtgacttgcttggtgtattgcgacggtcagtccctattgatttctggg
gcggaggatggttctgttagagtctggtctcttgtcacgatatttgataaaacgtggatg
gagcgggcgaaacaccttcatatgtataattttgctgagcacactttacgagtgactgac
attgccatgggtcatggaggacccaatgcaattataatatctgcttctgaagaccggacc
tgtaaggtctggagcttagctaggggggagctattgagaaatattgtattcccatcaata
attgatgcaattgcattggaccctgtggagtatgtattctatgctggaggtagagatggg
aagatatacattgcggcactcaatgctcctgacatcaacaacaattatgggatgtatatt
cttggttcattagctgatcaaagtaaggctgtcacttccttagcatttgacgtggatggg
gtgttattaatttctggctatgaagatggcatggttcgagtgtgggacaccaggactcgt
aatatcattcgcatattcaaacatgcaaaaggtcctgttaacaatattcttgttatgagt
tctccactaagcttaaatcctcggatggtactgaattctcaatctgcttcagtgggaagg
catggatctacattagcacctccactggagaagtacacaagttctgccgatgaaatcgta
gaaattaagacttatctaggtggccagtctacttgtgttgaaccactgagtggctcatac
atcagtgctcaaattattaataatcagatcaaagagctacagcaacaaggttcttctgca
actgatggactcgaggtggaacaactaaagaatgacttgtcaagatctatgcaaatggcc
cagaagtggaagaaaatgtatgaaaacttgcatcaattttgtgtgaatgagcttatggac
ggagatcaagatgaaggcgacaatggaaagtctacttga
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