Diospyros lotus (date-plum): 127807512
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Entry
127807512 CDS
T10632
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127807512
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127807512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
127807512
NCBI-ProteinID:
XP_052201371
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Position
8:complement(41175102..41202636)
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AA seq
1031 aa
AA seq
DB search
MDEERFISARENPRNLAGFSNGARVMPGEASAAQKPMPTILDRFKAVLRDREDDMRVSMA
GDDQDVPPPTSEEVVRLYEQMLSELTFNSKPIITDLTIIAGDQREHGEGIAEAICARILE
VPVEQKLPSLYLLDSIVKNIGKEYVRYFSLRLPEVFCEAYRQVQPNLYPAMRHLFGTWST
VFPASVLHKIEAQLQFSPSANRQSPSLTTLRASESPRPTHGIHVNPKYLEARHQFEHSTA
DSNNQPARGTSSTSKNNRQKPASGYDEYDSENVEVISSQVGTPGLSSTAHATRSSFALGA
EKLPLPSASRLLNSSPFRIEHGRSLSPPVDIAVDNSPRRVIERASPSRLGFEYGHGRMTG
REDQSSHWPGKRWSDGSYKLVETSPLYPNGIELQRPRALIDAYGSDERNQTSSKPLKVDM
NGMDNKFNIKTWQNTEEEEFDWEDMTPNVANRRQNNDVPSSSGPPSFRTRPGYGTNIADA
DFRRSNHLTQARISIHKDSSVIPEDSDPTLSSGRGSSSNITGLHENTTKILSSHYPQGRL
NFLGQPSHHPLNAVRNARNFQMLGSSGAEQRPLLSSYPDVDAHPHGSSSNVSRIGAAGLD
TWKSEALSGTAPPSTGVWTAVNVQKLRPFPVPHLLPPQKQTQNKFESMNANQALNKSILP
EHQFSNIRNKTVSSIKPLLFPNQQSGSILLNPQNAGQVSSVQQQLLLTQEARKNLVPPTA
IPTAVSVPSPAQTLTHGYTSQGHYTAVTSVLSNPIPGVHPPMSMLNAPGGSIHLQGGGLP
PLPPGPRPPSQMIPISHNPVPIASNPQAGGAITGLISSLMAQGLISLTKETPLEDSVGLE
FNLDVLKVRHESAITALYTGLPRQCTTCGLRFKSQEEHSIHMDWHVTKNRISKNRKQKPS
RKWFVSVSMWLTGAEALGTDAVPGFLPDESIVEKKDDEEFSVPADEDQNVCALCGEPFDD
FYSDETEEWMYKGAVYMNAPGGSTAGMDRSQLGPIVHAKCRSESSAVSPEGFGQDEKGYT
EEGSQRKRLRT
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagcggttcatatcggcgagggaaaaccctagaaatctcgccgggttcagc
aacggcgccagagtcatgcccggcgaggcatccgccgcgcagaagcccatgccgacgatt
ctcgaccggttcaaggctgtgctcagagacagagaggacgatatgcgagtttcaatggcg
ggcgacgaccaggacgttcctccgcccactagcgaggaagttgtgcggctttacgagcag
atgttgtctgagcttactttcaattcgaagcccataattaccgaccttaccataattgcc
ggcgaccagagggagcacggagagggcattgccgaagcgatttgcgcccggattctcgag
gtcccagttgagcaaaaactgccctctctttatcttttggacagtattgtcaagaatata
ggcaaggaatatgtgaggtacttctctttgcgtttgccggaggttttctgtgaggcttac
aggcaagttcagcctaacctgtatcctgccatgcgccacctctttgggacctggtccact
gtgtttccagcttcagtgcttcacaagattgaggcacaattgcagttttctccatcagca
aatcgtcaatcgcccagcctgacaaccctaagggcttctgagtcccctcgaccaactcat
ggaatacatgtcaatcctaaatacttggaagcaagacatcagtttgaacattcaactgca
gatagtaacaatcaacctgcaaggggaacttcttcaacttcaaaaaacaatagacagaaa
cctgccagtggatatgatgaatatgattctgaaaatgtggaggtcatatcatcacaggtt
ggaactccaggattgagctcaactgctcatgcaactcgtagttcttttgctttgggtgct
gaaaagttgcctctgccttcagcttccaggcttttaaactcttctccttttagaattgag
cacggaagatcgttatcaccacccgttgatattgcagtggacaattcccctaggagggtc
attgaaagggcctccccatctcgtcttgggtttgaatatgggcatggcagaatgacaggc
agagaggatcagtcaagtcattggccagggaagcgctggtctgatggttcttataagcta
gtagaaacttctcctctatatcctaatggaattgagcttcaaagacccagggcacttatt
gatgcgtatggaagtgatgaaaggaaccaaacttcaagcaagcctttgaaggttgatatg
aatggcatggataataagttcaacataaaaacatggcagaatactgaagaggaagaattt
gattgggaagatatgaccccaaatgtagcaaaccggagacagaataatgacgtaccatca
tcatctggcccgcctagctttagaacaagacctggctatggaactaatattgcagatgcc
gatttcaggaggagcaatcatttgactcaagcacgcatttctatccataaggattcttct
gtaattcctgaagattctgatccaactctcagttcaggtcgtggatcaagcagtaacatc
acaggattgcatgagaataccacaaaaattctgagctctcattatcctcaaggaaggctg
aattttcttggtcagccttcacatcatccgcttaatgctgtaagaaatgcaaggaatttc
caaatgcttggttcatctggtgctgagcaaagacctcttcttagcagttatcctgatgtt
gatgcacatcctcatggatcctctagcaatgtgtcaaggattggagctgcaggtcttgat
acatggaagtcagaagctctttcaggtactgcgccaccatcaactggggtgtggactgca
gttaacgtacaaaaacttcgccctttccctgtaccgcatcttcttccaccacagaaacag
actcagaataagtttgagtcaatgaatgctaatcaagcacttaacaagtcaattttgccc
gagcatcagtttagtaatattcgaaacaagacagtaagctcaataaagccacttttattt
cctaaccagcagtctggatcaatccttttgaatccacagaatgctgggcaagtttcttct
gtacaacaacaattgctattgactcaagaagctcggaaaaatttagttccacctactgct
attcccactgcagtttctgttccatctccagcacaaaccttgactcatggatatacatct
caaggacattatactgcagtaactagtgtactttcaaacccgattcccggtgtgcatcca
cccatgtcaatgctcaatgcaccaggcggctctatccatttgcaggggggaggcttaccc
cctttacctccagggcctcgtcctccatcacaaatgatacctatctcacacaatccagtt
cccattgcctccaaccctcaagctgggggtgcaatcacgggtttgattagttctctcatg
gctcaaggtttgatctcattaacaaaagaaactcctttggaggattctgtgggacttgaa
ttcaatcttgatgttctgaaggtgaggcatgagtctgcaataacagctttatatactggt
ctcccaaggcaatgcacaacatgtggtcttcggttcaaatcccaagaggagcatagtatt
catatggattggcatgtcacaaaaaaccgcataagcaaaaaccgtaagcagaagccttct
cgcaagtggtttgtaagtgttagcatgtggcttactggtgcagaagcattggggactgat
gcagtccctgggtttttacctgatgagagcattgttgaaaagaaggacgatgaagaattt
tctgttcctgctgatgaggatcaaaatgtctgtgcgctgtgtggagagccttttgatgac
ttttatagtgatgagactgaggaatggatgtacaagggagctgtctacatgaacgctcct
ggtgggtcaacagctggcatggatcggtctcagttaggtcccatagtacatgctaaatgc
aggtcagagtctagtgcggtttctcctgaaggttttggacaagatgaaaagggttataca
gaagagggtagtcaaaggaaacggctaaggacctag
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