Diospyros lotus (date-plum): 127807554
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Entry
127807554 CDS
T10632
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127807554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127807554
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127807554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_16
TPR_14
TPR_12
TPR_CcmH_CycH
TPR_8
TPR_7
TPR_9
TPR_20
BTAD
TPR_15
Motif
Other DBs
NCBI-GeneID:
127807554
NCBI-ProteinID:
XP_052201461
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All DBs
Position
8:34070622..34095091
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AA seq
1200 aa
AA seq
DB search
MKMGEEEEEDRAGGEAAGQLRQLQESIDSNPDDPALHFDLGLLLWEKGHESKEIREKAAG
HFLISAKLNPQNALAFRYLGHYYSRASDDSHRALKCYQRALALYPDDSDSGEALCDLLDQ
AGKESLEVAVCREASEKSPRAFWAFRRLGYLQVYQKKWSEAVPSLQQAIRGYPICADLWE
ALGLAYQRLGMFTAAMKSYGRAIELEGSRFFSLVESGNIFLMLGSFRKGIEQFQKALQIF
PQNISSQYGLASALLGLSKECVNSGAFHWGASLLEEASHVAKTSACLAGNFSSVWKLYGD
IQLAYARCLPWMEGAWGLETDDEAFVSSILSWKGTCHSAAVSACSSYQRALHLTPWEANI
YTDLAIASDLVCSFNECVKEDPDAWQLPEKMSLGGLLLEGYNKEFWVALGCLSGHSALRQ
HAFIRGLQIDVSLATAWAYLGKLYGEQGAKQLATQAFDHARSIDPSLALPWAGMSADVYV
RGLTPDEAYESCLRAVEILPLAEFQTGLVKLALRSGHLSCPQVFGAIQQAVQQMPYSPES
HNMNGLVCEARFNYQSAALSYRLARSAIINFAGNVPKCQLSDVSINLARSLFRSGNALDA
VQECEDLDKEGLLDLEGLQIYALSLMQLGKNELVLSISKRLAASALSTKPPFRDASVSLI
CRLLYYISGLDSAVTGILEMPKEFFQSSKVSFVVSAIHAMDQSNQLDSVVSSSRNFLITN
EEITRMHFLIALTKVIKNGSSECLEIQSGVRHLQKVLHKYPNSDLIRNLLGYLQLFSKEW
KDAHIASRCCTIGPPGCLQEEGLKSAYEILGAGAVACYTRENYNRKWAFPSCGCQCQYDT
RAIQQVQRLLHQEPWNHNARYLLIINYLQKAREERFPRHLCDVLGRLLNVALSSQLYSKK
DKTSQYQMFQLLLCASEMSLHCGDHIGCISHAKNASGILLPNSYLFFAHLQLCRGYAAGD
NFSSLREDYIRCVELKTDYPIGWLCLKFIESQYELHTESNLLQLCLDNCSNEIKNSLNTW
VAVFSLLQGMGAIWNQDFLSAEQLLGQACSLAHDESCLFLCHGAICMELARQLWDSRFLS
LAARSLKKAKELSIISIPIVSLLLGQAEASLGSKAKWEKNLRLEWFSWPPDMRPAELFFQ
MHLLSRQSKDDSESSSSVELSQTPQSWILRAIHLNPSCLRYWKVLHKYMEEFNAYQRISL
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgggagaagaagaagaagaagacagagcaggaggagaagccgccggccagtta
aggcagctgcaagaatctatagactccaatcctgatgatcccgctctccatttcgacctc
ggactgttattgtgggagaaggggcacgaatcgaaagaaatcagagaaaaagcggcgggg
catttcctaatttctgccaagttgaaccctcagaacgccctcgcttttagatatttgggc
cattattatagtcgagcatccgacgacagccacagagctctcaagtgttaccagagagcc
ctcgccctctatcctgatgactccgattctggggaagcattgtgtgatttgttggatcaa
gcaggaaaagagagcctggaagttgccgtctgccgtgaagcttcagaaaaatcaccaagg
gccttttgggcttttcgaagattgggttaccttcaggtttatcaaaagaaatggtctgaa
gcagtaccgagtctgcagcaagccatccgaggctatcctatttgtgctgatttgtgggaa
gctttgggtcttgcctaccagcggttaggcatgtttaccgcggctatgaagtcatatgga
cgtgctattgaattggaggggtcaagattcttttctctggttgaaagtggaaatattttt
ttgatgcttggttcctttagaaagggaattgagcagtttcagaaagctttacagatcttc
cctcaaaatatatcttcacagtatggccttgcttctgcactgcttggtttgtcaaaggaa
tgtgtgaattcaggtgcatttcattggggagcttcattgttagaggaggcatctcatgtt
gcaaaaacgagtgcctgcttggctggaaatttttcttctgtttggaagttgtatggagat
atccagcttgcatacgcaagatgcttaccatggatggagggtgcctggggtttagaaact
gatgatgaagctttcgtaagttccatcctttcatggaaagggacctgccattcagctgca
gtttctgcatgtagttcctatcaacgggctttgcacttgacgccgtgggaggcgaatatc
tatactgatcttgctattgcttcagatctcgtttgctctttcaatgagtgtgttaaagag
gatcccgatgcatggcagctacctgagaagatgtccttggggggcttgcttcttgagggt
tacaacaaggagttctgggtggcattaggatgtttaagtggtcatagtgcattgagacaa
catgcttttatacgaggactgcagattgatgtatctctagctactgcttgggcatacctt
ggaaagctctatggagaacagggtgcgaagcaattagctacacaagcatttgatcatgct
agaagcatagatccttcacttgcattaccatgggcaggaatgtcggctgatgtttatgtt
aggggactgactccagatgaagcatatgagagctgtttgcgtgcagtagagatactgcca
cttgcagaatttcaaactggtcttgttaagcttgctttgcgttcaggtcacctttcatgt
ccacaggtttttggagccatacaacaggctgtacagcagatgccctactctcctgaatca
cacaatatgaatggtctggtttgtgaggcacgctttaattatcagtctgctgctctctct
tatagactagcacgttctgcaatcatcaactttgccggcaatgttccaaaatgtcaactc
agtgatgtatcaattaatttggccagatcactttttaggtcggggaatgctcttgatgct
gtacaagagtgtgaagacttggacaaagaaggtctgcttgatttggaaggtttgcagata
tatgctctttctttaatgcaacttggtaaaaatgagctagttctttctatatcaaaaagg
cttgctgctagtgctctgtctactaaaccaccattcagggatgcctctgtcagcttaatc
tgtagattactctactacatttcgggattggattcagcagttactggcatcttagaaatg
cccaaggagttttttcaaagttcaaaagttagttttgtagtatctgctattcatgctatg
gatcaatctaatcagctggattcagtggtttctagcagtcgtaactttcttataactaat
gaagagatcaccaggatgcacttcttgatagcactgactaaagttataaaaaatggatct
agtgaatgccttgagattcaaagcggagtaagacatcttcagaaagtccttcataagtac
cctaacagtgatttgataaggaatctacttggttatctccaactgtttagtaaagaatgg
aaagatgctcacattgcaagtagatgttgtactataggccctccagggtgtctacaggaa
gagggtttaaaatctgcatatgagatccttggtgctggtgcagttgcttgttataccaga
gaaaactacaacagaaagtgggctttcccaagctgtggatgccagtgccaatatgacaca
agagcaatccaacaggtgcagaggttgttacatcaagaaccatggaaccataatgcccgg
tatttgcttataattaattatctacagaaggctcgtgaagagagatttccacgacatcta
tgtgacgtgcttgggcggctactaaatgtggctctttccagtcagttatattcaaagaaa
gacaagacttctcaatatcaaatgttccagcttctgctttgtgcctctgaaatgagtttg
cattgtggagaccacattggctgtatcagccatgcgaaaaatgcttcagggattttgctt
cccaatagttatctcttttttgcacacttgcagttgtgtcgtggttatgctgctggagac
aacttttcaagtttacgggaagattatattagatgtgtggagctcaaaaccgattatcct
attggttggctgtgcctcaaatttattgaatcccaatatgagctgcacactgaatcaaat
ctattgcagttgtgccttgataattgctcaaatgagattaagaattcattaaatacgtgg
gtggctgtatttagtttgctacagggtatgggtgctatatggaaccaggatttcctttct
gcagaacagttacttggacaagcctgttctttggctcatgacgagagctgcctctttctg
tgtcatggtgccatctgtatggagcttgctagacagctttgggattcacggttcctgtca
cttgctgctaggagtcttaagaaagctaaagagttatctatcatctccataccaattgtc
tcattattactgggtcaagcagaagcaagccttggctctaaagcaaaatgggagaaaaac
ctgcgtcttgaatggttttcatggccaccagatatgaggcctgcagaactcttttttcaa
atgcatttgctttcaagacaatcaaaagatgattctgaatcttcatccagtgtagagttg
tctcaaacccctcagagctggattcttcgtgcaattcatttaaacccttcttgtctgaga
tattggaaagttctgcataagtatatggaggagttcaacgcttaccaaagaataagccta
tag
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