Diospyros lotus (date-plum): 127808772
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Entry
127808772 CDS
T10632
Name
(RefSeq) uncharacterized protein LOC127808772 isoform X1
KO
K06100
symplekin
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127808772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127808772
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127808772
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127808772
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127808772
U7-dependent histone pre-mRNA processing factors
127808772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
127808772
NCBI-ProteinID:
XP_052203339
LinkDB
All DBs
Position
8:complement(29139969..29222669)
Genome browser
AA seq
1324 aa
AA seq
DB search
MPGHLRDQALSLLAQANNHGDLAVKLSSLKQAKDILAAAGPSIAPELFPYLAELQYSPEA
LVRKSLIEVLEEIGLKAMGHSSILMPVLLALLKDNNSAVARQSIVSGTNFFCSILEELSL
QFHQHGIVERWLEELWTWMIKFKDAVYGILWQAASDATKLLALKFLETCVLLFTPDSNES
EKPTPEVMTRHWAFNVSWLDGGHPVLNPVALTSEANRSIAILLNLLRSASSLSGSLTICV
INCLSTIARKRPLHYDSILSAFLDFEPNYEAARGCHMASVHYSIRTAFLGFLRCTFPAIL
ESRDRLLGALRGMNAGDAADQVIRQVDKMIKNSERASRDARLSRDDQASSQVPVGGDTIR
KRPMPVENEEPNNAHDMASKRIHHGPNTHSDLPIQNSDSGWDYTANGVSSKVSLLDSGLS
PVEQMIAVISALIAEGERGAKSLEILISEIQPDLLADIVMVNMWHLPKSCPPLLRHYGLP
VTSQSGSSGPPSVDVPIGSPSVQSPVQTLSSSSNAVCMVVPELSTSSNLPAEPKRDPRRD
PRRLDPRRAAVSVEVPQMLHVDDTEDMQSEIASSLVTTVETTSGSFLPKIDDDAQKLESP
VVSRCNQLDPVEEKVLEVASQENAPAVEVDEPLLSPVHRTDEDLAESRLSDISTPDDSHK
SSALQADELSPAASEMNILEEACPDLPVLPLYVDLTEEQQRNVRKLATERIIYAYKPLQG
ADCSQTRIALLARLVAQCDADDDMVGMIQKHIVSEYQLQKGHELAMHVLYHLHSLMVSDS
VELSSFAAIAYEKFLLGVAKSLLDALPATDKSFSRLLGEVPLLPDSALKLLDNLCCSDYQ
CGKDGRDGDHVTQGLGAVWSLVLGRPLNRQACLDIALKCAIHPHDDIRSKAIRLVANKLY
VLNYISTDIEQFAMKMFLSAVEQRISDAELPQSVSAEQRTEWERGRQETSISGSQLSEPG
TSENDLKGEQSDMQSDSPVSFSEAQRLVSLFFALCIKNPRRLQLVFENYTRAPKAVKQAI
HRHIPSLTRSLGSSYSELLRIISDPPQGSENLLKQVLSILSEGTPPSADLIDTVKHLYET
KMKDATILIPMLSSFSKTEVLPIFPRLVDLPLDKFQTALAHILQGSAHTGPALTPAEVLV
AIHGITPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQA
IDAFPALVDFVMEILSKLVSKQKIWRMPKLWVGFLKCVSQTQPHSFHVLLQLPPPQLESA
LNKYASLRGPLAAYASQRPIRTSLPRSVLVLLGLANESQMQESRVPSALHASETSSSVHG
ATLT
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgcccggacatttgcgggaccaggcactatctctactcgcccaagccaacaaccatggc
gatttggcggtgaagctctcttctttgaagcaggccaaagacatattggccgctgccggt
ccttctatcgctccagaactcttcccctatctggctgaacttcagtattcccctgaagcc
ctagttcggaaatcccttatcgaggtgctggaagagattgggttgaaagcaatgggacac
tcttcaatattaatgccagtcttattggcattgttaaaagacaataattctgctgttgca
agacaatccattgtcagtgggaccaacttcttttgcagcattctggaggagttgtcatta
cagttccatcagcatggtattgttgagaggtggcttgaagagctgtggacatggatgatt
aagttcaaggatgctgtctatggtattttgtggcaggctgcttctgatgctacaaagctt
ctggctctgaaattcttggagacgtgtgttttactttttacacctgactccaatgaatct
gagaaacctactccggaagttatgactagacactgggcttttaatgtttcatggctggat
ggtggccaccctgtgcttaatccagttgctcttacatcggaagcaaatagatccattgcc
atcctactgaatttgttgcgatcggccagcagtctttctggatcattgacaatatgtgtt
attaactgtctatcaaccattgcgagaaagaggcccctccactatgattctattctttct
gcatttcttgacttcgaaccaaactatgaggcagcgaggggatgtcatatggccagtgtt
cattattcgataaggactgcttttctggggttccttaggtgcacttttcctgctattttg
gagtcaagagacagattacttggggcactacggggaatgaatgctggagacgctgctgat
caagttatccgtcaagttgataaaatgataaaaaatagtgagcgtgcttcacgtgatgcc
cggttatctagggatgatcaggcatcaagtcaggttcctgttggaggtgataccataaga
aaaaggcccatgcctgtggaaaatgaagaaccaaataatgctcatgatatggcttccaaa
agaattcatcatggtcctaacacacactctgatctgcccattcaaaacagtgattctggg
tgggattacactgccaatggagtatcttctaaggtttctcttcttgatagtggcttgagt
cccgtggaacaaatgattgccgtgattagtgctttaatcgcagaaggggagagaggtgct
aaatcacttgaaattttaatatctgaaattcaacctgatctgttggctgatattgtcatg
gttaacatgtggcacttgccgaaaagctgtccaccattactgagacattacggcctgcca
gtgacttctcaaagtggttctagtggtccaccttcggttgatgtaccaattggttcccct
tctgttcagtctcccgtacaaacactttcctcttcatctaatgcagtctgcatggtagtg
cccgagttgtctacttcctctaaccttccagcagaacccaagcgtgacccaagacgggat
ccacggcgccttgacccacggcgtgcagcagtatctgttgaggtgccacagatgcttcat
gtggatgacacagaagatatgcaatctgagattgcttcttcactggtcacaactgttgaa
actacatctggatcttttttgcctaaaattgacgatgatgcacaaaaactagaaagtcca
gttgtgtctagatgcaatcaattggatcctgtggaggagaaggttctggaagtagcttcc
caggaaaatgcccctgctgttgaggttgatgaacctttgctttctcctgttcacagaact
gacgaggatttagcagaatcaaggttatcagatatttcaactccagatgattctcataaa
tcatctgcactacaagctgatgaactttctccagctgcttcagaaatgaatatcttagaa
gaggcctgccctgatttacctgttcttccattatatgttgacctgactgaagaacagcaa
agaaatgtgagaaaattggctaccgaaaggattatttacgcttacaagcctttacaaggg
gcagattgtagccagacaagaatagcattgctagctagattggttgctcagtgtgatgct
gatgatgacatggttgggatgatacagaaacatattgtctcagaataccaattgcagaag
ggacatgagcttgcgatgcatgtgttgtaccatttgcactctcttatggtttctgattct
gttgaactatcttcttttgctgctattgcgtatgaaaaattcctcctgggggtggcaaaa
tctttgctggatgctctgccagcaacagacaaatcctttagtcgacttttgggggaagtt
ccacttttgcctgattctgcattgaaattattggacaacttatgctgctctgattatcaa
tgtggaaaagatggacgtgatggtgatcatgtgactcagggccttggtgctgtgtggagc
ttggttttgggccgtccactaaatcggcaagcctgcttggatattgcattgaagtgtgct
atccatccacatgatgacattcgttcaaaagctattcgactggtggcaaacaaactctat
gtccttaactatatttcaacagatattgagcaatttgcaatgaaaatgtttttgtcagcc
gttgagcaacgcatttcagatgcagagctccctcaatctgtatctgctgagcaaagaaca
gaatgggagagaggaagacaggaaacatccattagtggttcacagttgtcagagcctgga
acatctgaaaatgacttgaagggtgaacaatctgatatgcaaagtgattcgccagtttca
ttttctgaagctcaacgcctcgtttctctattttttgctttatgtataaagaatcctaga
cgacttcaacttgtatttgaaaattatactcgagctccgaaggctgttaagcaggccatc
caccgtcacattcctagtcttacgagatccctggggtcatcatattctgaattgcttcgt
ataatatctgatccgccacaaggaagtgaaaatcttctgaagcaggtcctaagcatattg
tctgaagggacgcctccttcagctgatctaattgacactgtcaaacacttatatgaaact
aaaatgaaggatgctacaattctaattccaatgctatcatcattttccaaaactgaggtt
ttacccattttccctcggcttgttgaccttcctttggacaagtttcagacagcacttgct
cacatattacagggttcagcacatacaggtccagcattgacaccagcagaagttttggtt
gcaatccatgggattactcctgagaaagatggacttgcacttaaaaagattacagatgct
tgctcagcttgctttgagcagcggaccgttttcacacagcaggttttggcgaaggccttg
aaccagatggttgaccaaacccctttacccctactcttcatgagaacagtaattcaagca
attgacgctttccctgcactggttgattttgtgatggaaatactttccaagctcgtgagt
aaacagaagatttggagaatgccaaagttatgggttgggttcctaaaatgtgtctctcaa
acacagccacactcttttcatgtattattacagctacctccaccgcagcttgaaagtgct
ctcaacaagtatgcaagccttagaggtccacttgctgcttatgccagccaacgacctata
agaacttctctacctagatcggtgcttgtacttcttggccttgcaaatgaatcacagatg
caagaatcgcgggtgccatctgccttgcacgcttcagaaacaagttcttctgttcatggt
gcaacactaacatga
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