KEGG   Diospyros lotus (date-plum): 127808820
Entry
127808820         CDS       T10632                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
dlt  Diospyros lotus (date-plum)
Pathway
dlt03030  DNA replication
dlt03410  Base excision repair
dlt03420  Nucleotide excision repair
dlt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dlt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127808820
   03410 Base excision repair
    127808820
   03420 Nucleotide excision repair
    127808820
   03430 Mismatch repair
    127808820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dlt03032]
    127808820
   03036 Chromosome and associated proteins [BR:dlt03036]
    127808820
   03400 DNA repair and recombination proteins [BR:dlt03400]
    127808820
DNA replication proteins [BR:dlt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    127808820
  DNA Replication Termination Factors
   ELG1-RFC complex
    127808820
Chromosome and associated proteins [BR:dlt03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    127808820
DNA repair and recombination proteins [BR:dlt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     127808820
  Check point factors
   HRAD17(Rad24)-RFC complex
    127808820
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N AAA_11 AAA_16 Mg_chelatase AAA_5 nSTAND3 AAA_14 ResIII AAA_24 AAA_2 SLFN-g3_helicase PhoH AAA_assoc_2 AAA_28 AAA_7 CPG4 AAA_19 T2SSE NPHP3_N AAA_30 RNA_helicase AAA_25 Parvo_NS1 DUF3853 DUF815 TIP49 IstB_IS21 AAA_18 bpMoxR DNA_pol3_gamma3 NB-ARC
Other DBs
NCBI-GeneID: 127808820
NCBI-ProteinID: XP_052203427
LinkDB
Position
8:6663745..6684442
AA seq 341 aa
MAPVMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGRQGGYPCPPFKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMTS
RILYICKEEGLNLNSEALSTLSSISLGDLRRAITYLQGAARLFGSSISSKDLISVSGVIP
QEVVHSLFSACKSGNFDLANKEVDNIIAEGYPVSQMLSQLFDVVVEADDISDEQKANICK
KLAEADKCLVDGADEYLQLLDVASQTMRVLCNMPLEFSYQN
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccggtaatgcagagttctcagccatgggtcgagaaatatcgaccgaagcaagtg
aaggacgttgctcatcaggacgaagtcgttcgtgtcctcaccaacaccctcgagacctcc
aactgcccgcatatgttgttctatggtccacctggaacaggaaaaaccaccactgccctt
gccatagcccaccagctttttggacctgaactctataagtctagggtcttggagcttaat
gcaagtgatgaccgtgggataaatgtagttcgcacaaaaatcaagaactttgctgctgtt
gcagtaggttccggacgtcaagggggctatccttgcccaccatttaagataatcatccta
gatgaggcagattccatgactgaagatgctcagaatgctttacggcgtacaatggaaact
tactccaaagtcacaagattctttttcatttgtaattacattagcaggatcattgagccc
cttgcttctagatgtgcaaagtttaggttcaaaccactttcagaagaaattatgacgagt
cgtatattgtacatttgtaaagaggaaggtctcaatctgaattctgaggctctttcaacc
ttaagctccatctcactaggtgatcttcgtcgggctataacgtatttacagggagctgca
cgcttatttggatcatctatttcttccaaggacttgattagtgtgtcaggggtgattcct
caggaggttgttcactctctgttttcagcttgcaaaagtggtaattttgacttggcaaac
aaggaagtcgataacataattgctgagggatatccagtttctcagatgctttctcagttg
tttgatgtagttgttgaagcagatgatatttcggatgaacagaaagcaaatatatgcaag
aaattggctgaagcagataagtgtcttgttgatggggcagatgagtatttgcagctgttg
gatgtggccagccaaacaatgcgagtactttgtaacatgccacttgagttttcatatcaa
aactaa

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