Diospyros lotus (date-plum): 127809163
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Entry
127809163 CDS
T10632
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03013
Nucleocytoplasmic transport
dlt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127809163
03015 mRNA surveillance pathway
127809163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127809163
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127809163
mRNA cycle factors
P-body specific factors
127809163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
127809163
NCBI-ProteinID:
XP_052203851
LinkDB
All DBs
Position
9:31166294..31221013
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AA seq
1209 aa
AA seq
DB search
MDHPEDDCRVEGEHHGKQDDEMHKYVNCGFQEAVARHEELKKSVEAKMALRQSNLNPERP
DSGFLRTLDSSIKRNTAVIKKLKQINEEQRESLMDELRGVNLSKFVSEAVTAICDAKLRS
SDIQAAVQICSLLHQRYKDFSPSLIQGLLKVFFPGKSGDDLEIDRNLRAMKKRSTLKLLL
EIYFVGVVEDSSIFVNIIKDLTSMEHLKDREATQTNLSLLASFARQGRTFIGLPQSGEEI
LEEFFKGLNIQADQKKFFRKAMHSYYDAVAELLLSEHNSLRQMEHENAKILNAKGELSDE
NASSYEKLRKSYDHLYRGVSALAEALDMQPPVMPEDGHTTRVTTGEDTSSPGSGKDSSVL
EAIWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKADQASKTQEQPSHGIFCAKDLAPDSD
QGQMASSDYVEISLDSGTLQEGKNEKGKDKDEKDKEKTKDPDKEKGKDKDSEKKGEIEKE
KIKGLEGTNLDGLLQRLPGCVSRDLIDQLSVEFCYLNSKSHRKKLVRALFNVPRTSLELL
PYYSRMVATLSTCMKDVSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIA
PAGLLFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKN
LDPRHSTLVENAYYLCKPPERSARVSKVRPALHQYIRKLLFSDLDKSSIEHVLRQLRKLP
WSECELYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVSVVDEVLEEVRLGLEVND
YGMQQRRLAHMRLLGELYNYEQLESSVIFDTLYLILVFGHGTPEQDVLDPPEDCFRVRMV
ITLLETCGHYFGRGSSKRKLDRFLIHFQRYILGKGVLPLDIEFDLQDLFADLRPNMTRYA
SIEEVDTALIELEEHEHIVSTDKANSEKHSDTEKPSSRSAAGSVSVNGRSLANGVEENEV
HEVMADSETDSGSGTVDPEGHDEDEDLDEENNGDVDSEDDYDDTGGPASEEDEEVHVRQK
VTEVDPQEEAEFDRELKALMQESLDSRKLELRARPTLNMMVPMNVFEGPTNKDHHGRGFE
GESGDETLDEESGGHKEVRVKVLMKRGNKQQTKQMSIPRDCSLVQSTKQKEAAELEEKQD
IKRLVLEYNDREEEELNGLGAQPIGWTQSGGSRFSNRGHAWEAHSGRTPGSRQRYQHHPG
GGSYYSRRK
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggatcacccagaggatgattgtcgtgttgaaggtgaacatcatggtaaacaagacgat
gagatgcataagtatgttaattgtggattccaggaggctgttgcacgtcatgaggaactt
aaaaagtcagtggaggctaaaatggctcttcgtcagagtaacctgaaccccgaaagacct
gactctggtttcctcaggacattagattccagcattaagcgcaacactgcagttattaaa
aaacttaagcagattaatgaagagcagcgggaaagtttgatggatgagttgcgaggtgtc
aacttaagcaaatttgttagtgaagcagtgacagctatttgtgatgccaagcttagatct
tcagacatacaagctgctgttcagatctgttctttgcttcatcaaaggtacaaagacttc
tcaccaagtttgattcaaggcctcttaaaagtctttttccctgggaagtctggggatgac
ttggagatagaccgaaatttacgagccatgaaaaagcgcagcactttaaagctccttttg
gaaatttactttgtcggagttgttgaagacagtagtatttttgttaatatcattaaggat
cttactagcatggagcacttaaaggatcgagaagcaactcagacaaacctgtctttgctt
gccagttttgcacggcaaggaaggactttcatcggacttccacaatctggagaagaaatc
cttgaagagttttttaagggtcttaatattcaagcggatcagaagaaatttttccggaag
gcaatgcattcctattatgatgcagttgcagaactacttttatcagagcacaattcactt
cgccaaatggagcatgaaaatgcaaagatccttaatgcaaaaggtgagctgagtgatgaa
aatgcctcttcgtatgaaaagctgcgaaaatcttatgaccatctgtatcgcggtgtttca
gctttagctgaggctcttgacatgcagcctccagtgatgccagaggatggtcacacaact
agggtcacaacaggggaggacacatcatctcctggttctgggaaagattcttctgttctt
gaagcaatatgggatgatgaagatactagagctttttatgaatgcttaccagatctaaga
gcatttgttcctgcagtattattgggtgaagcagagcccaaggcagatcaggcttcaaag
acacaggagcaaccatctcatggaatcttttgtgcaaaggacttggcacctgattcagac
caaggtcagatggctagctcagattatgtggagatttctttggattctggaactttgcag
gagggcaaaaatgagaaagggaaagataaagatgaaaaagacaaagaaaagacaaaagat
cctgacaaagagaaaggaaaagacaaggattctgagaaaaaaggagaaattgagaaggaa
aaaattaaaggtcttgagggaacaaatttggatggtctactgcagaggcttcctggttgt
gtgagccgtgacctgattgatcagttatctgtggaattttgttatttaaattcgaaatca
caccgaaaaaagcttgtcagggctttgtttaatgtgccccggacatctctggaattgctg
ccatactactcacgcatggttgctacgctgtcaacttgtatgaaggatgtctcttccatg
ctcttgcagttattggaggaggagtttaactttttgataaataagaaggatcaaatgaac
attgaaacaaagatcaggaatattcggttcattggagaactttgcaagttcaggattgct
ccagctggccttctttttagttgtttgaaggcttgtttagatgattttactcatcataat
attgatgttgcttgcaatcttcttgagacatgtggtcggtttctttaccggtctcctgaa
actactgtacggatggctaacatgttggagatattgatgcgtttaaaaaatgtcaaaaat
ttggatcctcgtcacagcacactagtggaaaatgcttattacctttgtaaaccaccagaa
cgatctgcacgggtctctaaagtccgtccagcattgcatcagtacatccgaaaactactt
ttctcagatctcgacaagtcttcaattgagcatgttctgagacaactccgcaaattacct
tggagtgaatgtgaattataccttcttaaatgctttatgaaggttcacaaaggaaagtat
ggtcagattcacttgattgcatcacttactgctggcttgagtcggtatcatgatgaattt
gcagtttctgttgtcgacgaggtcttggaggaagtaagactgggattggaggtgaatgac
tatgggatgcagcaacgccgccttgctcacatgcggcttttaggggaactatataactat
gagcagttggaatcatctgtcatttttgatacactttacttgattctcgtgtttggccat
ggaactccagagcaagatgtgttggacccaccagaagactgttttcgtgtgagaatggtt
attacacttcttgaaacctgtgggcattattttggtcgaggttcttcaaagaggaaactt
gatcggtttttaattcatttccagagatatattcttggaaaaggtgtattacctctggat
attgaatttgatttacaggacttatttgcggatttacgtccaaacatgacccgttatgca
tccattgaagaagttgatacagctctaattgaacttgaggagcatgaacatattgtttct
actgataaggccaacagtgagaagcactcagacacggaaaaaccttcaagcaggagtgca
gctggtagcgtctcagtgaatggacgtagccttgcaaatggtgttgaggaaaatgaagta
catgaggtgatggcagacagtgagactgattcagggagtggcaccgttgacccggaggga
catgatgaggatgaagatttggatgaagagaataatggtgatgtagacagtgaagatgat
tatgacgatacaggtggtcctgcctctgaggaggatgaagaagtccatgttaggcagaag
gtgacagaggtggacccgcaggaggaagcagagtttgacagagaacttaaggctttgatg
caggagagcttggattcgcgaaagctagaattgcgggcccggccaacattgaacatgatg
gtacctatgaacgtgtttgagggacccactaataaagatcatcatggaaggggatttgag
ggggaaagcggcgatgagacactagatgaggagtcaggaggacacaaggaggtcagggtg
aaagttcttatgaagcgtgggaacaagcaacaaacaaagcagatgtccattccccgggat
tgctcactggttcagagcacaaaacagaaagaagcagccgagctcgaggagaagcaagac
atcaagaggttggtcttggaatacaatgatagagaagaggaggagctcaatggattgggt
gcccaacccattggatggacacaaagtgggggaagcagattttccaatcggggccatgca
tgggaagcacacagtgggaggactcccgggtcgcgccagcgctatcagcatcatccaggc
ggtggttcctactatagccgaagaaagtga
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