Diospyros lotus (date-plum): 127809177
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Entry
127809177 CDS
T10632
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127809177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127809177
Spliceosome [BR:
dlt03041
]
Complex B
Other components
Prp19-related factors
127809177
Complex C
127809177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
zf-CCCH_10
zf-CCCH
RRM_occluded
zf-CCCH_4
RRM_YTH1
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
127809177
NCBI-ProteinID:
XP_052203888
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All DBs
Position
1:31844554..31852693
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AA seq
478 aa
AA seq
DB search
MAHRLLRDVEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSFGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARVT
EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAADELSNKLVIKGLRLKLMWGR
PQAPKPEGESSDGARQQAALAHSGMLPRAVISQQQNQLQPPGTQDQPPQMHYFNIPPPPQ
QERTYYPSMDPQRMGALVPSQEGASNAPTGAADNNADSGKQQQGQHYGYQAPPPPPPQGQ
FHQPFYPPYGYMPPPPPLPYQQYPPVPYHSTMPPMPPPPPPPAAQQYQHSEQPGSSQQ
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctgagagacgtcgaagccgatgggtgggaacgttccgacttcccc
atcatatgcgagtcgtgcctcggagataatccgtacgttcgaatgacaaaggcagattat
gacaaggagtgcaaaatttgcactaggccctttacagtttttaggtggaggcctggccgt
gatgcaaggtataaaaaaactgagatttgccagacttgcagtaagttgaaaaatgtttgc
caagtttgccttttggatctcgaatatggattgccagttcaggttcgagatactgctctc
agtattaattccaatgatgccattccgaaaagtgatgtgaatagggaatattttgcagag
gagcatgatcgaagggctagagctggtatagattatgaatcttcattcggcaaggtaagg
cctaatgatactattttgaagcttcagagaacaacaccatattacaagagaaatagagca
catatctgcagtttctacattcgaggggaatgcacaagaggtgctgagtgcccttacagg
catgagatgcccgaaactggagagttgtcacaacaaaacattaaagatcgctactatgga
gtgaatgatcctgtggcattgaagttattaaacaaggcaggtgaaatgccctcattggaa
ccgcccgaggacgagagcataaaaaccttatacgtaggcgggcttgatgcaagagtgacc
gagcaggacttgagggataatttctatgctcatggtgagatcgagtccataaagatggtg
ctgcaacgagcttgtgcctttgtaacctacacaaccagagaaggtgcagagaaagcggcc
gatgaactttcaaacaagctagtcataaagggtctgaggctgaagctgatgtggggtagg
ccccaggcaccaaaacccgagggtgaaagttctgatggagcaagacagcaggccgccttg
gctcatagtgggatgttgccaagggcagtcatatcccaacaacagaaccagctacaacca
cccggtactcaggaccagcctccacagatgcactacttcaacattcctcctccacctcag
caggagaggacatattacccatccatggatcctcagagaatgggtgccctcgttccatcc
caagagggagcttccaatgcgcccacaggagcagctgataacaacgctgattctggaaag
cagcagcaaggccagcattacggttaccaagcgccgccaccaccaccacctcaaggtcaa
tttcaccagccattttatccaccatatgggtatatgccgccgcccccacctcttccttac
cagcaatatcctcctgtgccttatcactcgactatgcctcccatgccgcccccaccccca
cccccagcggctcagcagtatcagcattcggaacaaccaggatcatcacagcagtga
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