Diospyros lotus (date-plum): 127809276
Help
Entry
127809276 CDS
T10632
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03008
Ribosome biogenesis in eukaryotes
dlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127809276
09123 Folding, sorting and degradation
03018 RNA degradation
127809276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127809276
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127809276
03009 Ribosome biogenesis [BR:
dlt03009
]
127809276
03016 Transfer RNA biogenesis [BR:
dlt03016
]
127809276
Transcription machinery [BR:
dlt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127809276
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
127809276
Ribosome biogenesis [BR:
dlt03009
]
Eukaryotic type
Pre-60S particles
RNases
127809276
Transfer RNA biogenesis [BR:
dlt03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127809276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
127809276
NCBI-ProteinID:
XP_052204000
LinkDB
All DBs
Position
1:complement(52268996..52326942)
Genome browser
AA seq
844 aa
AA seq
DB search
MGIPAFYRWLLDRCPLAAVDVIEEAPVVVNGVSVPVDSSLPNPNGIEFDNLYLDMNGIVH
PCFHPEGLPAPETYEEVFKAVFKYIDRIFSMIRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDAADELASKAKKVERQASRLERLRGVCKSAWEEKTISAHTKKLDSNVITPGTEFMSL
LSLALQYYVRLRLNMDPGWRGIKVILSDASVPGEGEHKIMSYIRLQRNLPGFDPNTRHCL
YGLDADLIMLALATHEIHFSILREDVRKAHMGNRGLREALSRQGKASRLNLEDYIMRQKF
QFLHVWVLRDYLAYELRIPDPTVTADLERLIDDFVFMCMFVGNDFLPHVPSLEISQGAID
LIMVVYKKEFVKMGGYLTNSFEVNLERVEHFVQAVGSHESAIFRKRSQVKKERDLRFASH
THSGIEKIQSSINQVNSDGNHVIDQVKLGEEGWKERYYSEKFEANSDDDREKIRRHSVLK
YIEGICWVMHYYYQGVCSWQWFYPYHYAPFASDFYGLDQLEINFTLGKPFKPFDQLMGVL
PAASAHALPFFYRNLMTDLSSPILDFYPTDFELDMNGKRFPWQAICKLPFIKESRLLSEI
AKVEHTLKDEEKQRNSLGLDMLFVYKSHPLAKKIFSFYKRNKDHPKLPNTKLKRKINPEV
SGGMNGFMYISDKPVCPLEIESPISDMAMIIKNKIVSVFYKCPSFHPHIPEPPKGVNIPE
KCVSKQDVLPPPVLWHEQSAIHGRVFSERPIPNSISGLYLAKLAHRLVCEYYHARPGSQG
CMQVDNNNIDVGVDDLPCQSNSRATVCGQELDGSSGNCMTNNPKKRGRETGKSSSRKRRR
NNDN
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggggatacctgcattctaccggtggctgcttgacagatgcccgctcgccgccgtcgac
gtcattgaagaagctccggtcgtcgtcaacggcgtttcggttcccgtagactcaagtcta
ccgaaccctaacggcatcgagttcgacaatctgtaccttgacatgaacggaattgttcac
ccctgtttccaccctgaaggcctgcctgctccggaaacttatgaggaggtgtttaaggcg
gtgttcaagtatatagaccgaattttctcgatgattagacctcggaaactcttgtttatg
gcaattgatggtgttgcaccacgtgctaagatgaatcaacaacgatcaagacgtttcaga
gctgctaaggatgctgctgatgaacttgcttcaaaggcaaagaaagttgaaaggcaggcc
tctagactagagaggctgagaggagtttgtaaatcagcatgggaagagaaaactatttcg
gcgcatacaaaaaagctggattcaaatgttatcacaccaggaactgaattcatgtcatta
ctgtcgttggctcttcaatattatgtacgcttaaggttgaacatggatccagggtggaga
ggaatcaaggtcattctgtctgatgccagtgtgcctggcgagggggagcataagataatg
agttatatccgcttacaaagaaatctgccaggatttgacccaaacacgaggcactgtttg
tatggattggatgcagacttgatcatgcttgcactggctacacatgaaatccatttctca
attttaagagaggatgtccgaaaggcacatatgggtaatagaggtttaagagaagccttg
agtaggcaagggaaagcgtctcgcttgaacctagaagactatataatgaggcagaaattt
cagtttctccatgtatgggtactcagggactatctagcatatgagttgagaataccagat
ccaacagtaacagcagatttggaacgcctaattgatgattttgtcttcatgtgtatgttt
gttggaaatgactttctacctcatgtgccgtctttggagatatctcagggggccatcgat
ctaataatggttgtctacaagaaggaatttgttaaaatgggcggctatctgactaattca
tttgaggtaaatttggaacgtgtggagcactttgtacaagctgtcggttctcatgagagt
gcaattttcagaaaacgtagtcaggtgaagaaagaaagggaccttcgttttgcttctcat
actcattctggcattgagaagattcaaagctcaataaaccaagtaaacagtgatgggaat
catgttattgaccaggttaaactaggagaagagggatggaaagagagatactactctgaa
aagtttgaggctaattcagacgatgatcgtgagaagattcgtagacattcagtcctaaaa
tacatagaaggcatttgttgggtcatgcattattattaccaaggagtctgctcttggcaa
tggttttatccctaccattatgccccttttgcttcagatttctatggccttgatcaattg
gagattaacttcacactagggaaacctttcaagccatttgaccagttaatgggtgtatta
cctgccgcaagtgcacatgcacttcctttcttttacaggaatttgatgacagatctatca
tctcctattttggacttctatcccacagattttgagctagatatgaatgggaaacgcttt
ccttggcaggctatttgcaaattaccctttattaaggagtcccgccttctttcagaaatt
gctaaggtggagcacacattgaaggatgaagaaaaacaaagaaacagtttgggcctggat
atgctctttgtttacaaatctcatcctttggcgaagaagatcttttctttctacaagcga
aataaagatcatccaaagttgcctaacactaaactcaaaaggaagatcaatcctgaagtg
agtggtgggatgaatggattcatgtatatttctgataaacctgtctgtcctctggagatc
gagtccccaatcagtgacatggcaatgattattaagaataaaatcgtatctgttttttat
aaatgcccctcttttcatcctcacatcccagaaccaccaaaaggagtaaatatacctgag
aagtgtgtcagcaaacaggatgtcttgcctccacccgttttatggcatgagcagtcagcc
attcatggacgtgtattttctgaaaggcccatccccaattccatctctggtctttatctt
gcaaaattggctcatcggcttgtgtgcgagtattatcatgcaaggccaggaagccaagga
tgcatgcaagttgacaacaacaatattgatgttggtgtggacgacctgccatgccagtca
aactcgagagctacagtttgtgggcaagaactagatggaagcagtgggaactgcatgaca
aataatcctaagaaaagggggagagagactggcaaatctagtagtagaaaaaggagaaga
aataatgataactga
DBGET
integrated database retrieval system
