Diospyros lotus (date-plum): 127809475
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Entry
127809475 CDS
T10632
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127809475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127809475
03036 Chromosome and associated proteins [BR:
dlt03036
]
127809475
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127809475
Chromosome and associated proteins [BR:
dlt03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
127809475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
127809475
NCBI-ProteinID:
XP_052204249
LinkDB
All DBs
Position
9:35310387..35350702
Genome browser
AA seq
1617 aa
AA seq
DB search
MFGAGSGSSIFGQKYSIGEFSSSTGSTFQQTHATFGSGPFGSFTSTASTENSPAAASALT
FGAHCTSPFGAACISAISSSSTPTFGSTGTTFAVFSAPTFGSGTGLSNSIIGVSSTFVVG
ASRSPGFGTPGGTAQFGFGTTPKFGQSFGSGNLVGAAPVFGIQSFSFGVPATMPTLGTAR
FEQVGIGSQRRGSRLAAYTATSEEEDGGSGNQPTAKLQSITAMPLNKDKSHEELRLDDYE
LGGKGSSIFGQKASIGEFSSGTGSTFQQTEATFGGGPFGSSTSTASTENSPAAASALTFG
AHSTSPFGAACISAIGSSSAPTFGSTCTAFAVSSAPTFGSGTGSSNSIIGVSNTSMVGAS
PSPGFGTPGGTAQFGFGTTPTFGQSFGSGNLVGAAPVFGIQSFSFGVPATMPTLGTARFE
QVGIGSQRRGSRLAAYTATSEEEDGGSGNQPTAKLQSITAMPLNKDKSHEELRWDDYELG
DKGSSIFGQKSSIGEFSSSTGSTFQQTQATFGSSLFGSSTSTASTENSPPAASALAFGAH
NTSPFGATSISAISSSSTPTFGSTCTAFAVSSAPTFGSGTWSSKSIIGVSNPSVVGASSS
PGFGTPGGTAQFGFGTTPTFGQSFGSGNLVGAAPVFGIQSFSFGVPATMPTLGTARFEQV
GIGSQCRGSRLAAYTATSEEEDGGSWNQPTAKLQSITAMPLNKDKSHEELRWDDYELGDK
GSSIFGQKSSIGEFSSSTGSTIQQTEATFGSGLLGSSTSTASTENSPAAASALTFGAHST
SPLGAASISEIGSSSTPTFGSTGTAFAVSSAPTFGSGTGSSNSIIGVSNPSVVGASSSPG
FGTPGGTAQFGFGTTPTFGQSFGSGNLVGAAPVFGIQSFSFGVPATMPALGTTRFEQVGI
GSQRRGSRLAAYTATSEEEDGGSGNQTTAKLQSITAMPLSKDKSHEELRWDDYELGDKGG
FSGVCQAAGVTVNVGSTTSNYSAPLPTPLFQSSLNPFCPLTSVIPFVPSSLLPRPPSTNS
FSIRSSAALANNSPSLSSPLCIGPPTSAFGSSFFTGSSSANPFRITPFSVPSPPVTTAAP
VFLTNSFPSLSSQSCSFIGPFPSISVSASPLQTSSGFNCGLNSANTQSSPLSVSVGPSFT
HTNALFPQPYIAPFFSQPKASNAQPVGPQVGENFLSSIPPLFSVNNLPGSTQAGQPSLST
PLRPTLTTQPAPTFTTSHFPQSSTGLRGFESITSGCGQSTFRKLSDAQSTVPVQPAPNVS
PLGALPTMPRLSICQAGSTSPVRYGISSMPVSDKPAAVGRVSSLLTFRHLSRRRIMLPVR
NYGAKSDGPKVPFFSSDEMAAAPKADALLVPRENPRALVILPDERWPLRSMKEKMSHLAL
PSVHVYKNDHFAENSPDMEGADPSKLIKKPYGGSTYDFSQGRALHTRATGHEAGEAAILE
EHVADIQALMPRLRRSDYYTEPGIQELAAKERAEPGFCRHVKDFVVGRDGYGRVKFLGET
DVQKLDLDYYIHFNNREVIVYMDESKKHPVGQGLNKPAVVTLLNIKCIDEKTGKQYVDGP
KVDKYREFLVKKAKKQGVEFVSYDPVEGEWKFKVQHFSQYEFRDDSEWGDGFSTFFL
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgttcggggccggatctggatcttcgatatttggacagaagtattctattggggaattt
tcatcaagtactggaagcacatttcaacaaacacatgcaacttttggcagtggtccattt
ggttcttttacttccactgcatcaactgaaaattcaccagctgctgctagtgccctgacc
tttggtgcacattgcacatcaccttttggtgctgcatgtatttcagcaatcagttcatca
tctacccctacatttggcagcacaggcacaactttcgctgtcttcagtgcaccaacattt
ggatctgggacagggttaagtaactctatcattggagtatctagcaccttcgtggttgga
gcatcacgcagcccaggctttggtacaccaggaggcactgcacaatttggttttggtact
actccaaaatttggacaatcatttggcagtggcaacttagttggagctgctcctgttttt
ggcattcagagtttctcctttggagtcccagccacaatgccaacactcggaaccgcaaga
tttgagcaggttggtattggaagtcaacgcagaggaagtagactagcagcttacactgca
acatccgaagaagaagatggtgggagtgggaatcagcctactgctaaactacagtccatt
acagccatgccccttaacaaagacaaaagccatgaagaattgaggttggatgattatgag
ctgggtggtaaaggatcttctatatttggacagaaggcttctattggagaattttcatca
ggtactggaagcacatttcagcaaacagaagcaacttttggcggtggtccatttggttct
tctacttccactgcatcaactgaaaattcacccgctgctgctagtgccctgacctttggt
gcacatagcacatcaccttttggtgctgcatgtatttcagcaatcggttcatcatctgcc
cctacatttggcagcacatgcacggcttttgctgtctccagtgcaccaacatttggatct
gggacagggtcaagtaactctatcattggagtatctaacacctccatggttggagcatca
cccagcccaggctttggtacaccaggaggcactgcacaattcggttttggtactactcca
acatttggacaatcatttggcagtggcaacttagttggagctgctcctgtttttggcatt
cagagtttctcctttggagtcccagccacaatgccaacacttggaaccgcaagatttgag
caggttggtattggaagtcaacgcagaggaagtagactagcagcttacactgcaacatcc
gaagaagaagatggtgggagtgggaatcagcctactgctaaactacagtccattacagcc
atgccccttaacaaagacaaaagccatgaagaattgaggtgggatgattatgagctgggt
gataaaggatcttctatatttggacagaagtcttctattggagaattttcatcaagtact
ggaagcacatttcaacaaacacaagcaacttttgggagcagtctgtttggttcttctact
tccactgcatcaactgaaaattcaccccctgctgctagtgccctggcctttggtgcacat
aacacatcaccttttggtgctacaagtatttcagcgatcagttcatcatctacccctaca
tttggcagcacatgcacagcttttgctgtctccagtgcaccaacatttggatctgggaca
tggtcaagtaaatctatcattggagtatctaacccctccgtggttggagcatcaagcagc
ccaggttttggtacaccaggaggcactgcacaatttggttttggtactactccaacattt
ggacaatcatttggcagtggcaacttagttggagctgctcctgtttttggcattcagagt
ttctcctttggagtcccagccacaatgccaacactcggaaccgcaagatttgagcaggtt
ggtattggaagtcaatgcagaggaagtagactagcagcttacactgcaacatccgaagaa
gaagatggtgggagttggaatcagcctactgctaaactacagtccattacagccatgccc
cttaacaaagacaaaagccatgaagaattgaggtgggatgattatgagctgggtgataaa
ggatcttctatatttggacagaagtcttctattggagaattttcatcaagtactggaagc
acaattcaacaaacagaagcaacttttggcagcggtctgttgggttcttctacttccact
gcatcaactgaaaattcacccgctgctgctagtgccctgacctttggtgcacatagcaca
tcacctcttggtgctgcaagtatttcagaaatcggttcatcatctacccctacatttggc
agcacaggcacggcttttgccgtctccagtgcaccaacatttggatctgggacagggtca
agtaactctataattggagtatctaacccctccgtggttggagcatcaagcagcccaggc
tttggtacaccaggaggcactgctcaatttggttttggtactactccaacatttggacaa
tcatttggcagtggcaacttagttggagctgctcctgtttttggcattcagagtttctcc
tttggagtcccagccacaatgccagcactcggaaccacaagatttgagcaggttggtatt
ggaagtcaacgcagaggaagtagactagcagcttacactgcaacatccgaagaagaagat
ggtgggagtgggaatcaaactactgctaaactacagtccattacagccatgccccttagc
aaagacaaaagccatgaagaattgaggtgggatgattatgagctgggtgataaaggcggg
ttctctggtgtatgtcaagctgcaggggtgactgttaatgttggttccactacctcaaac
tactctgctcctttacctacgccactttttcagtcatcattgaatcccttctgtcccttg
acctctgtaattccatttgtgccatcatctcttctgcctagaccgccatctacaaattct
ttcagcataagatcatctgcagctctggccaataattctccatctttgtctagcccatta
tgtataggaccacctacttcagcttttggctcatctttttttaccggatcgtcatctgca
aatcctttcaggataacaccattttctgtaccttctcctcctgtaacaacggcagcccct
gtatttctgaccaatagttttccatctttgtctagccaatcatgctcatttataggacca
tttccctctatctctgtttccgcttcacctttgcaaacatcttctggatttaactgtggt
ttgaattctgcgaacacacaatcatccccactatctgtgtccgtcggaccctcattcaca
catacaaatgctttgtttccacaaccatacattgcccctttcttcagtcaaccaaaagcc
tctaatgcacaaccagttggacctcaagtgggggaaaacttcttgtctagcataccacct
ctgttttctgtgaacaatctgcctggttctactcaagctggtcagccttctttgtctact
cctttgcggccaactctcacaactcagccggcacctacttttactactagccattttcct
caatcatcaacaggtttacgtggctttgagagcattacctcgggatgtggtcagagcacc
tttagaaaactgtctgatgctcagagcactgtgccagtgcagccagcacctaatgtgagc
cctttaggagctttacctacaatgcctaggctgtcaatttgtcaggctggatctacatca
ccagttcggtatggaatttctagcatgcctgtgtctgataagcctgcagctgttggaagg
gtgtcatccttgctgacgtttagacacttgtctcgaagacggattatgttaccagttcgg
aattatggtgctaaaagtgatggcccaaaggtgccattttttagtagtgatgaaatggct
gctgcacccaaggcagacgctttattagttccaagggagaacccaagagctttagttata
cttccagatgaacggtggcccctgcggtctatgaaggagaaaatgtctcatttggcactt
ccatccgtccatgtgtataagaatgatcattttgctgaaaatagtcctgacatggagggt
gccgatccttccaaattgatcaagaagccttatggaggaagcacttatgatttctcccag
ggaagagctttgcataccagagccacaggtcatgaagctggtgaggctgcgattctggaa
gaacacgtagctgatattcaagcattaatgccacggcttaggcgttctgactactacaca
gaacctggaatccaggagctggctgccaaggaaagagctgagccaggattctgcagacat
gtgaaggattttgtggttgggcgtgatggctatggcagagtcaagtttctgggagaaaca
gatgtgcagaagcttgatctggattactacatccactttaacaaccgtgaagtgattgtc
tacatggacgagagcaagaaacatccagtgggacagggtctcaacaagcctgcagtggtc
actctccttaacatcaaatgcattgacgaaaagacaggcaaacagtacgtcgatgggcct
aaggttgataagtacagagagtttctggtaaagaaagcaaaaaaacaaggtgtggagttt
gtgtcatatgaccctgtggaaggggaatggaaattcaaggtccagcacttcagccaatac
gagtttagagatgacagtgaatggggagatggtttctcaactttctttctttga
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