Diospyros lotus (date-plum): 127810540
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Entry
127810540 CDS
T10632
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03013
Nucleocytoplasmic transport
dlt03015
mRNA surveillance pathway
dlt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127810540
09122 Translation
03013 Nucleocytoplasmic transport
127810540
03015 mRNA surveillance pathway
127810540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlt03019
]
127810540
03041 Spliceosome [BR:
dlt03041
]
127810540
03009 Ribosome biogenesis [BR:
dlt03009
]
127810540
03012 Translation factors [BR:
dlt03012
]
127810540
Enzymes [BR:
dlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127810540
Messenger RNA biogenesis [BR:
dlt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127810540
mRNA cycle factors
Stress granule specific factors
127810540
Spliceosome [BR:
dlt03041
]
Complex C
Other components
EJC/TREX
127810540
Ribosome biogenesis [BR:
dlt03009
]
Eukaryotic type
90S particles
Helicases
127810540
Translation factors [BR:
dlt03012
]
Eukaryotic type
Initiation factors
eIF-4
127810540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
127810540
NCBI-ProteinID:
XP_052206034
LinkDB
All DBs
Position
9:4218059..4223211
Genome browser
AA seq
410 aa
AA seq
DB search
MATAVVPANRGRGGGRMAEEDEEKLVFETSKGVEPIVTFDEMGIKDDLLRGIYNYGFEKP
SAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELASQ
TEKVILALGNFINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAI
KLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILV
KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNN
FTVSSMHGDMPQKERDAIMSEFRAGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggtggtaccggcgaacagagggcgcggcggcggaaggatggcggaggag
gacgaggagaagctggtgttcgagacgagcaagggcgtggagccgatcgtgacatttgac
gagatggggataaaggacgatctgctccgggggatctacaactacggcttcgagaagccc
tccgcgatacagcagagggcggtgcttcccataatccaaggccgcgatgtcatcgcccag
gcccagtccggtacaggcaagacctccatgattgccctaactgtttgccagatggtcgac
acctcctcccgagaggtccaagcattaatactgtcacctacaagggaactggcatctcaa
acagagaaagtcatattagcccttggtaattttattaatatacaggcccatgcatgcatt
ggaggtaaaagcgtgggcgaagatatcagaaaactagaatatggagttcacgtggtgtct
ggaactccaggtagagtttgtgacatgatcaagcggaggactttacggaccagagctatc
aaactgttggttcttgatgagtctgatgagatgttgagcaggggttttaaggatcaaatt
tatgatgtctatagatatcttccaccagagcttcaagttgttttgatatctgctacgctt
cctaatgagattttggagattacaagcaaatttatgacagatcctgttagaatccttgtg
aaacgtgatgagttgacgcttgagggtatcaagcaattttttgttgcagtagaaagggag
gagtggaaatttgatactctgtgtgatctttatgatactcttaccatcacccaggctgtt
attttctgcaacacgaagcggaaggttgattggctaacggagaagatgcgtagcaacaac
tttactgtctcttcaatgcatggagatatgccccagaaggagagagatgcaattatgtca
gagttccgagctggtgaaacccgtgtactgatcactacagatgtttgggctagaggcctg
gatgttcaacaggtttccctggtgatcaattatgaccttccaaataatcgagagctttac
attcaccgtattgggcggtctggacgttttggacgcaagggtgttgcgatcaacttcgtc
aaaagtgatgatatcaagattctgagagacattgagcagtattacagtactcagattgat
gaaatgccaatgaatgtggccgatctgatataa
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