KEGG   Diospyros lotus (date-plum): 127811378
Entry
127811378         CDS       T10632                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
dlt  Diospyros lotus (date-plum)
Pathway
dlt04120  Ubiquitin mediated proteolysis
dlt04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:dlt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    127811378
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    127811378
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dlt04121]
    127811378
Enzymes [BR:dlt01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     127811378
Ubiquitin system [BR:dlt04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    127811378
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     127811378
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 zf-C3HC4_2 Beta-prop_WDR19_1st EIF3I WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd WD40_like zf-C3HC4 Beta-prop_EML WD40_RFWD3 Beta-prop_CAF1B_HIR1 zf-C3HC4_3 zf-RING_2 Beta-prop_WDR75_1st zf-RING_UBOX Beta-prop_DCAF12 zf-RING_5 Beta-prop_WDR35_TULP_N zf-C3HC4_4 Beta-prop_SCAP Baculo_p24 U-box YpoC DUF1664 zf-rbx1 Beta-prop_IFT122_2nd zf-RING_10 zf-Nse
Other DBs
NCBI-GeneID: 127811378
NCBI-ProteinID: XP_052207130
LinkDB
Position
10:6203108..6269980
AA seq 667 aa
MEECSTGPSVPAVKLEVRTPPHVDPVDVGPPSSAETDKDYSCPICMQIIKDAFLTACGHS
FCYLCIVTHLRNKSDCPCCGRYLTNNQLFPNFLLDKLLKKISAHQKLNTASPVEQFCQAL
QQGCEVSVKEIDALLPLLAEKKRKLEQEEAERNMQILLDFLHCLRKQKVDELNEIQNDLQ
FIKEDINAVERHRIDLYRARDRYSVKLRMLPDDSTSAKAWSSSVDKNNGNLISSSCNAKG
GMGMGSLQYKKVDGKVQVSTTAPQRKDSLSGLGSEHLSQSGLAVAKKKRVQAQFNDLQEC
YLQKRRQPANKPDKQEEGDKDVIYREGYTAGLSEFQSVLTTFSQYSRLRVIAELRHEDLF
HSANIVSSIEFDRDDELFATAGVSKRIKVFDFSTVVNEPADVHCPVVEMSTRSKLSCLSW
NKFTKNHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV
KVWCTKQEASVLNIDMKANICSVKYNPGSSIYVAVGSADHHIHYYDLRNTSNPLHVFSGH
KKTVSYVKFLSNDELASASTDSTLRLWDVKENLPVCTFRGHTNEKNFVGLAVNNRHIACG
SETNEVFVYHKAISRPVTWHRFGSPIVDETDEDSGSYFISAVCWKNDSPTMLAANSQGTI
KVLVLAA
NT seq 2004 nt   +upstreamnt  +downstreamnt
atggaggagtgctcgacggggccttccgtgccggcggtgaagctggaggtcagaactcca
ccgcatgttgatccggttgatgtaggtccaccgtcttcggcggagacggacaaggactat
tcgtgcccgatttgtatgcagatcatcaaggacgcgttcctcacggcgtgcggtcacagc
ttctgctacctctgcatcgtcactcacctccgcaacaagagcgattgcccttgctgtggc
cgttacctcaccaataaccagctgttccctaatttcctcctcgacaagctattgaagaag
atatctgctcaccaaaaattgaacactgcatcccctgtagaacaattttgtcaggcgttg
caacagggctgtgaggtgtcagttaaggagatagatgctcttctgccactgcttgcagag
aaaaagagaaaattagagcaagaagaagctgagagaaatatgcaaatcttattggacttc
ttgcactgcctaaggaaacagaaggttgatgagctaaatgagatacaaaatgacctccag
tttattaaggaggacataaatgcagtggagagacatagaattgacttgtatcgggcaagg
gacaggtattcagtgaagctgcgaatgcttcctgatgattctacatcagcaaaagcttgg
tcttcatcagtagacaaaaataatggcaatcttatttccagttcttgtaatgcaaaagga
ggtatgggtatgggaagtcttcagtacaagaaagtggatggaaaggttcaagtaagcact
actgctccccagcgaaaggatagtctgagtggactgggttcggaacatttgagtcaatct
ggccttgctgttgcaaagaaaaagcgtgtgcaggcacagttcaatgacctacaagaatgt
tacttacaaaagcgacgtcagccggcaaacaagccagataagcaggaagaaggggataaa
gatgtcatatatagggaaggttatactgctggtctttctgaatttcaatctgtgttgact
accttctcgcaatacagtcgacttagggtcattgcggaacttaggcatgaggatcttttt
cattctgccaatattgtatcaagcattgaatttgaccgtgatgacgagttgtttgcaact
gctggtgtttcgaaacgcataaaggtttttgacttttctacagtcgtaaatgagcctgca
gatgtacactgtcctgttgtggaaatgtcaacacgatcgaagcttagttgcttaagttgg
aacaagtttaccaagaaccatattgccagcagtgattatgagggaatagtaactgtttgg
gatgttacaacacgacagagtgtcatggaatatgaggaacatgagaaacgagcatggagt
gttgatttttcacgcacggaaccctcgatgcttgtgtctggaagtgatgattgcaaggtc
aaagtatggtgcacaaagcaggaagccagtgttcttaacattgacatgaaagctaatatt
tgcagtgtcaagtacaatcctggatctagcatttatgtcgcggttggatctgcagatcac
catatccactattatgatttaagaaatactagcaatccactccatgtgttcagtggacac
aagaagaccgtttcctatgtgaaatttctgtcaaatgatgaacttgcttctgcatctact
gacagcaccttacgtttgtgggatgtgaaggaaaatttaccggtttgtaccttcaggggc
catacgaatgagaagaattttgtcggtcttgctgtcaacaaccgacatatagcttgtgga
agtgaaacaaatgaagtatttgtttatcataaggctatctcaagacctgtgacttggcac
agattcggttcgccgattgtagatgaaaccgatgaagattctggatcttacttcatcagt
gccgtatgctggaagaacgatagcccaaccatgttggctgccaacagtcaaggcactatt
aaagtgctggtgctcgcagcttga

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