Diospyros lotus (date-plum): 127811496
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Entry
127811496 CDS
T10632
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03440
Homologous recombination
dlt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127811496
03450 Non-homologous end-joining
127811496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dlt03032
]
127811496
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127811496
DNA replication proteins [BR:
dlt03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
127811496
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
127811496
BRCA1-C complex
127811496
NHEJ (non-homologous end-joining)
MRX complex
127811496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA
AAA_29
ABC_tran
AAA_16
AAA_22
PAS_3
Motif
Other DBs
NCBI-GeneID:
127811496
NCBI-ProteinID:
XP_052207374
LinkDB
All DBs
Position
10:33680102..33698536
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIESLKLACTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHSGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESISQDHEKTEALKS
QMQELERNIQNMDAKIHHTELTLKDLRKLQEQISTKTAERSTLFKEQQKQYAALAEENED
TDEELKEWKTKFEERIALLESKISKLEREMNDTDTKSSFLKQTINDYIWEISKLLTEAEA
HVSLKNERDSIIQKLFSRHNLGSLPSVPFSNEVALNLTNRIKSRLTYLEKDLEDKKKSNE
LELKVALDRYMGANDRWKDIEAQKQAKIEIKSGILKRIEEKENERDSFELQISNVNLVHI
DEREKNMRVEVERKTKQLAEREFESNIRQKQGEIYAIEQRIKALNREKDIMAADSEDRVK
LSLKKAELENLKNKHKKIMGECKDRVRGVLKGRLPPDKDLKKEVAQALRAHVIEFDDLNS
KSREAEKEVNMLQMKIQEVNSNLTKLHKDKDSRKRFIESKLQSLNQQFSGIDFYPQVLDS
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDNFVKKQRVKAAS
SAEHMKVLAVESSSADSFFQQLDKLRVVYEEYAKIGRETIPLAEKNLNELNEELDQKSQA
LDDVLGVLAQIKADKDSVEALMQPVETVDRLYQEIHALQKQVDDLEYKLDFRGQGVKSME
DIQLELNNLQSTKDSLHNDLEKLRDEQRYMENDLSSIQIRWHTTREEKVKAANTLRDVKK
AEEELDRLAEEKSQVELDEKHLAESLGPLSKEKEKLLSDYNDLKVKLNCEYEEQAEVRRN
YQQEIETLIRVTSKIKEYNDSRKGERLKELQEKQTLSESQLQSCDVRKQEILAELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDELTHEIESLEEKILKIGGVSTIESDLVKLSQERE
RLLSELNRCHGTMSVYQSNISKNKVDLKQAQYKEIDKRYFDQLILLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVSKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggataagatgctgataaagggtatccggagtttcgacccggagaacaag
aacgtcatcaccttcttcaggccgctaaccctcattgtgggacccaacggcgccggaaaa
actaccattatcgagtccttgaagctggcttgtactggcgagttgcccccaaatgcccgc
tctggtcatagcttcatccatgaccccaaggttgcaggggagacagaaacaaagggtcag
ataaagcttcgcttcaagacagcagctggtaaggatgtggtgtgtataaggtcatttcag
ctgactcagaaggcatcaaagatggaatacaaggcaattgagagtgtgcttcaaacaatt
aatcctcatagtggagagaaagtttgcctaagctatagatgtgctgacatggatcgggaa
attcctgctcttatgggtgtttcaaaagctatccttgaaaatgttatatttgtgcatcaa
gatgaggccaattggccattgcaagatccttctactttgaaaaagaagtttgatgatata
ttttcggcaactaggtacacaaaagcccttgaggtaattaaaaagcttcacaaggaacag
gctcaagagataaagacttacaagctaaagttggagcatcttcaaacattgaaagatgct
gcatataagctccgtgaaagcatatcccaggatcacgagaaaacagaagcattaaagagt
caaatgcaggagctagaaagaaacatacagaacatggatgctaagatccatcacactgaa
ttaacattaaaagatctgcggaaacttcaggaacagatatcaaccaagactgctgagaga
agcactttattcaaggagcagcagaaacagtacgcagctcttgctgaggagaatgaagac
acggacgaagagttgaaggaatggaaaaccaagtttgaggaaaggattgcacttctggaa
tctaaaattagcaagctggagagggaaatgaatgacacagacacaaaaagttctttcctt
aagcagacaattaatgactatatctgggagatcagcaaacttctgactgaggctgaagct
catgtctctttgaagaatgaacgagactcaattattcaaaagcttttttcaaggcataat
ttaggctctcttccaagtgtcccattcagcaatgaagttgctttgaacctcactaaccgc
atcaaatcaaggttaacataccttgagaaggacttggaagacaaaaagaaatcaaatgaa
ttagaacttaaggtggcattggatcgctatatgggtgcaaatgaccgctggaaagacatt
gaggctcaaaaacaagctaagatagagatcaagagtggtattctgaaacgtatagaagag
aaggagaatgaacgtgattcatttgaactccaaatttctaacgtgaatctcgtacatatt
gacgagagagaaaagaacatgcgtgttgaggtagagagaaagacgaagcaacttgctgaa
agagaatttgaatcaaatatacgccaaaaacagggtgagatttatgccattgaacagaga
attaaagctcttaaccgtgagaaagatatcatggctgctgattctgaggatagagttaaa
ttgtctctaaagaaggcagagttggaaaatctgaagaataagcataaaaagataatgggt
gaatgcaaagatagagttaggggagtgcttaagggaagacttcctcctgacaaggatttg
aaaaaagaagttgcacaagccctaagggctcatgtaattgagtttgatgacttgaactct
aaatcacgcgaggctgagaaggaggtgaatatgttgcagatgaaaatacaagaagttaat
agtaacttgaccaaacttcacaaggataaggattctagaaagagatttattgaatcaaaa
ctccaatctttgaatcagcagttctctggcattgacttttatcctcaagttttggattca
gccaaggaaaaaagagatgtgcagaaaagcaaatacaacattgctgatggtatgcggcag
atgtttgatccttttgaaagagttgctcgtgctcatcatatttgtccttgctgtgagcgc
cctttctctgctgaagaggaagacaactttgttaaaaagcaaagggtgaaggctgcaagt
tctgctgagcatatgaaagtgttggccgtagagtcttcaagtgctgattccttcttccag
cagttagacaagcttcgtgtggtatatgaagaatatgctaaaattggcagggaaacaatt
cctcttgcagagaaaaatttgaatgaactaaatgaggaattggatcaaaaatctcaggca
cttgatgatgttttgggtgtcttggctcaaataaaggctgataaggattctgttgaggcc
ttgatgcaacctgtagaaactgttgataggctttaccaggaaatacatgctctgcaaaag
caagttgatgatttggagtataagcttgattttcgggggcaaggtgttaagtctatggag
gatattcagttggagctgaacaacttgcagagcacaaaagatagtttgcataatgatctg
gaaaagttaagagatgaacaaaggtatatggaaaatgacctgtcaagtattcagatacga
tggcataccacaagggaagagaaggtgaaagcagctaatacattgcgtgatgtaaaaaag
gcagaggaggagttggatcgtttggcagaggagaaaagtcaagttgagcttgatgagaag
catttggcagagtcccttggccctttatccaaggaaaaagagaaattgcttagtgactac
aacgatttgaaagtcaagcttaattgtgaatatgaggagcaggctgaagtcagaagaaat
tatcaacaagaaattgagacacttattagagtgacttccaagattaaagagtacaatgat
tcaagaaaaggggagaggctgaaggaactgcaagaaaaacagactctatctgaatctcaa
cttcaaagttgtgatgtcaggaaacaggagattttggctgagctaaacaaaagtaaagat
ttgatgcgaaatcaagatcagttaagacgtaatattgaggacaacttgaattataggaaa
acgaaggctgaagtagatgagctcactcatgagattgaatcactggaagagaaaatactt
aagattggtggagtttcaaccattgaatctgatcttgtaaaattgtctcaagaaagagag
aggcttctttcagagttaaacaggtgccacggtacaatgtctgtatatcagagcaatatt
tcaaagaataaagttgatcttaaacaagcacagtacaaggaaattgacaaacggtacttt
gatcagcttatcctgctcaagacaaccgagatggcaaacaaggacctggatagatattac
aatgctctggacaaagcacttatgcgcttccacacaatgaaaatggaagaaataaataaa
attataagggaattgtggcagcaaacttacagaggtcaggatatagattatataagcatt
cattcagattcagaaggtgctggaactcgatcttacagttacagggtcctaatgcaaact
ggtgatgcagagctagaaatgcgaggaaggtgtagtgctggtcaaaaggtccttgcttct
cttattatacggttagcattagccgagactttttgcctcaactgtggtatactagcactt
gacgaaccaaccaccaacttagatggcccgaatgcagagagtctggctgcagctctcttg
agaatcatggaggaccgaaaaggccaagaaaatttccaactgatagtaatcactcacgat
gagcgatttgctcaacttattggccaacgccagcatgcagaaagatattaccgggtctca
aaagatgaccatcagcacagcattattgaatcccaggagatcttcgattga
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integrated database retrieval system
