Diospyros lotus (date-plum): 127811730
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Entry
127811730 CDS
T10632
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt03040
Spliceosome
dlt04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127811730
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127811730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dlt03041
]
127811730
04121 Ubiquitin system [BR:
dlt04121
]
127811730
03400 DNA repair and recombination proteins [BR:
dlt03400
]
127811730
Enzymes [BR:
dlt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127811730
Spliceosome [BR:
dlt03041
]
Complex B
Other components
Prp19 complex
127811730
Complex C
Prp19-CDC5 complex
127811730
Ubiquitin system [BR:
dlt04121
]
Ubiquitin ligases (E3)
U-box type E3
127811730
DNA repair and recombination proteins [BR:
dlt03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
127811730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_CDC20-Fz
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_HPS5
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_DCAF12
Beta-prop_SPT8
U-box
Beta-prop_DCAF4
PROPPIN
PEP5_VPS11_N
zf-Nse
Beta-prop_VPS8
KNTC1_N
PAS_11
B_lectin
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
127811730
NCBI-ProteinID:
XP_052207842
LinkDB
All DBs
Position
10:32276498..32296454
Genome browser
AA seq
524 aa
AA seq
DB search
MNCSISGEVPEEPVVSKKSGLLYEKRLIERHISDYGKCPITGEPLSMDDIVPVKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERQIPMSAPTVATVTASTLSNGKRGPADEDMGPDGKKICPGISSSIIA
ELTDCNAALSQQRKRRQIPPTLAPVDSVERYTQLSSYPLHKTSKPGILAMDILYSKDILA
TGGADTNAVLFDRSSGEILSTLSGHSKKVTSVKFVAQGDMVVTGSADKTVCLWQGSENGN
YDCRHVLKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCLTQVEDASGSGGYTS
AAFHPDGLILGTGTSEALVKIWDVKSQANVARFDGHVGAVTAVSFSENGYFLATAAHDGV
KLWDLRKLKNFRTFAPYDENTPTQSVEFDHSGSYLSIAGSDIRVYQVANVKSEWNCIKTF
PDLSGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLPGDDGPSES
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttccggtgaggtgccggaggaaccggtggtttctaagaagtccggg
ctgctttacgagaaacgattgatcgagagacacatatccgattatggaaaatgtcctatt
actggggagcctctgtccatggatgacattgtaccagtcaaaactggcaagatagtgaag
ccaaggccagtacaagctgcaagcattcctgggatgcttgggatgttccagattgagtgg
gatggcctgatgctatccaattttgcgctggagcaacaactacatacagcaaggcaagag
ctaagtcatgcattgtaccagcatgatgcagcttgtcgtgtgattgcaagactaaagaag
gaaagggatgaagcgaggtcattattggctcaggcagaaagacaaatacccatgtcagca
ccaacagtggcaacagttactgcttccactttgagcaacgggaaaagaggtcctgcagat
gaggacatgggccctgatggaaagaaaatctgccctggaatctcttctagcatcattgca
gagctcaccgattgcaatgctgcactttcacagcagcgcaaaaggcggcagatccctcca
acattggctcccgttgattcagtggagaggtatacccaactctctagttacccattgcac
aaaaccagcaagcctggcattttagctatggatatcctgtattcaaaggatattttggcc
acaggtggggctgatacaaatgctgttctctttgatcgatcatcaggagagatcttgtct
acacttagtggtcattcaaagaaggtgactagtgttaaatttgtagcacagggcgatatg
gttgttactggttctgcagataaaactgtttgtttgtggcaagggtctgaaaatgggaat
tatgattgtcggcatgtattgaaggatcatactgcagaggtacaagcagttaccgtccat
gccaccaataattactttgtcacagcttctctggataatacgtggtgcttttatgatctt
tcttctggtctatgcctcacacaggtagaagatgcttcaggatctgggggttatacatct
gcagctttccatccagatggtctcattctgggaacaggcacctcagaggcacttgttaaa
atttgggacgtaaaaagtcaggctaacgttgcaagatttgatggtcacgttggggcagta
actgctgtatctttctcagaaaatggttatttcctagcgactgcagcacatgatggagtt
aagttgtgggatctccgcaagcttaagaacttccggacatttgcaccttatgatgaaaat
actccaacacagtctgtggaatttgaccacagtggaagttacctttctattgctgggtca
gatataagggtatatcaagtggccaatgtcaagtccgagtggaattgcatcaaaaccttc
cctgatttgtctggcacaggtaaagcaacatgcgtaaaattcggcccagatgccaagtac
ctagcagtgggatcaatggacagaaacctccgtatatttggcttgccaggggatgatggc
ccgtcggaatcttga
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