Diospyros lotus (date-plum): 127812429
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Entry
127812429 CDS
T10632
Name
(RefSeq) protein SPA1-RELATED 2
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
dlt Diospyros lotus (date-plum)
Pathway
dlt04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
127812429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dlt04121
]
127812429
Ubiquitin system [BR:
dlt04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
127812429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_RIG_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Pkinase
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
127812429
NCBI-ProteinID:
XP_052208760
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Position
11:complement(2848636..2886972)
Genome browser
AA seq
1062 aa
AA seq
DB search
MEPGLGDEVAAIDAVGGKYLQGKDGDHSLKAESGSLLESHEMTTPGESQYYRGFSPALGT
ILEGKELVRGGMLEHQCATPHSIGDTGIMVEELTLKNFNSQSLPIVGTSNNRDKAQTRQN
QWQNFYQITSGIGTASTWPGALQDCGQPTASAWEDVGYTVFPELLSQNPSNEDHNNDMEH
QPNNENNAAASNVSTPCGGIRTKILSNSGFSQYFVKNTLKGKGVIYKGPAREASGMELRG
KTSSKAASNAVVAINAPLCSSIKTSVIPTRGIVGGELGPYLNGFHDGVTLREWLRGGKYK
ADKVKSLYIFRQIVDLVNFSHSRGVMLHDLRPSCFKLLPSNQVVYIGSSVRQGTAKDLID
QDSRLLENDRNEKRPIEQAMHPYLSQVLKKQKFGESLNSVRQWPMFPSRSGSKASTANIA
GSHDSWNERNKEHRLRSACKSEGNSASPDGSDTSPLMSACGGDPLEEKWYTSPEELSGMG
CTFPSNIYVLGVFLFELLGSFDSERARATAMSDLRHRILPPNFLSENPKEAGFCLWLLHP
EPLSRPTAREVLQSDVMSGIQESVGDELSSSINQDDTESELLLHFLVSLKDQRQNDALKL
VEDIKFLETDIVEVERRQTRKPLVLSCSRDSLDARGNRFLHSGSSAFEVHRKLTPRTNNE
LMLKNIDHLERAYFAMRSSVELSESNVATRPDKELLKERDNVYRAQNDKDENMPSDDLGA
FFSGLCKYARYSKFEVRGTLRNGDFQNSANVICSLSFDRDQEYFAAAGVSRRIKIFEFQA
LLNEAVDIHYPAAEMSNKSKLSCICWNSYIRNYLASTDYDGIVKLWDAGTCQGFSQYIEH
NKRAWSVDFSQVDPTKLASGSDDCTVKLWNINERNSLCTIRNIANVCCVQFSAHSSHLLA
FGSADYKTYCYDLRNVSSPWCILAGHDKAVSYVKFLDSGTLVSASTDNTLKLWDLKKTSS
TGFSTSACISTLKGHTNEKNFVGLSVADGYIACGSETNEVYAYYRSLPMPVTSHKFGSVD
PISGKETDDDGGQFVSSVCWRPKSDMLVAANSTGCIKVLQMV
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggagccaggactgggtgacgaagtggctgcaatagatgctgttggtgggaaatacctg
caaggaaaagatggtgatcattcactgaaagcagaaagtggcagtttattggaatcacat
gaaatgactacacctggtgagagccaatattataggggcttctcccctgcacttggaact
attttggagggtaaggaactggttagaggcggcatgttggaacatcaatgtgctactcct
cattctataggtgatacagggatcatggttgaagagttaactctgaaaaactttaacagc
caaagcttacctatagtgggaacctccaacaatagagataaagcacagactaggcagaac
cagtggcaaaatttctatcagataacaagtgggataggaactgccagcacatggccaggt
gctctacaagactgtggccagcctacagcaagtgcatgggaggatgttggttacacagtt
tttcctgagttattgagccagaatccgtcaaatgaggatcacaacaatgacatggaacat
caacccaataatgaaaacaatgctgctgcaagcaatgtctcaacaccatgtggaggtatc
aggacaaaaattctttccaactctgggttctcccagtattttgtaaagaatacattaaaa
ggtaagggggttatatataaaggtcctgctcgtgaagcatctggcatggagcttaggggc
aagactagttcaaaggctgccagtaatgctgtggtagctatcaatgcaccattatgttct
agcattaagacttcagtgattcctactcgtggtattgttgggggtgaactggggccttat
ctcaatggttttcatgatggagtcactttgagagaatggctcagaggtgggaaatataag
gcagataaagtcaagagcttgtatatatttcggcagattgtggatcttgtaaatttctct
cactctagaggagttatgttgcatgacctacggccttcttgctttaagttgctaccatca
aatcaggttgtatacattggctcttctgtgcggcaaggaactgccaaggatcttatagat
caagatagtcgtctcttagaaaatgatcgaaatgagaaaaggccaatagaacaggccatg
cacccttatcttagtcaagtgttaaagaagcaaaagtttggggaaagcctcaactcagtc
agacagtggcccatgtttccatcacgatctggctctaaagcttccactgccaatattgct
ggttcacatgattcctggaatgaacgtaacaaggagcacagactgagaagtgcatgcaag
agtgaaggcaactctgccagccctgatggatctgatacatctccattgatgtctgcttgt
ggaggtgatccattggaagagaagtggtataccagtcctgaggagcttagtgggatgggt
tgcacatttccgtcaaatatctatgttctgggtgtttttctctttgagttgcttgggtcg
tttgactctgaaagggcacgtgccactgccatgtcagatctgcgccataggattcttcca
ccaaattttctgtcagagaatcctaaggaagctggattctgtctttggttacttcatcct
gaaccattatcacggccaacagcaagggaagttctgcagtctgatgttatgagtggaatt
caagaatcagttggagatgagctgtcatcatctattaaccaagatgatactgaatcagaa
ttattactacatttcctagtctcattgaaagatcaaaggcagaatgatgccttgaagcta
gttgaagatattaaattcctggaaacagatattgtagaggtagaaagacgacaaacaaga
aaaccattagttctttcttgctcgagggattctcttgatgctaggggaaataggtttctt
cacagcggatcctctgcatttgaggtgcaccgtaagttaacccctagaacaaataatgaa
ttgatgttgaaaaatattgatcatctggaaagggcatactttgccatgagatccagtgtt
gaactttctgagagcaatgtggccacacgcccagataaagaattactgaaagaaagagat
aatgtgtatcgggcacagaatgataaagatgaaaacatgccatcagatgatcttggtgct
ttctttagtggtttgtgcaagtatgctcgttatagtaagtttgaagtgcgtggaacatta
aggaatggagattttcaaaattctgcaaatgtaatctgctctttgagttttgatcgagat
caggagtattttgctgctgctggggtatcaaggagaataaagatttttgagtttcaggca
ctccttaatgaagccgttgatatccattatccagcagctgaaatgtctaacaaatcaaag
ctcagctgcatttgctggaatagctatatcaggaattatttggcttcaactgactatgat
ggcatagtcaagctatgggatgcaggaacatgtcaagggttttctcagtatattgaacac
aataaaagggcttggtctgtggacttttctcaagtggatcctacaaaattagccagtgga
agtgacgattgtactgtaaaactctggaatattaatgagaggaacagtttatgcacaatc
aggaacattgcaaatgtctgctgtgttcaattttctgctcattcttctcatttgctagcc
ttcggctcggctgattacaaaacttactgctatgatcttcggaatgtttcaagcccctgg
tgtatattggctggccatgacaaagctgttagctatgtgaaatttttggactctggaact
cttgtttctgcatccactgacaacactctaaagctttgggatctcaagaaaaccagctca
acaggcttttcaaccagtgcttgcatctcaaccctcaaagggcacactaatgaaaagaac
tttgtgggtttatctgttgcggatgggtacatagcttgtggttcagagacaaatgaggtg
tatgcttattatagatccctgcctatgccagtcacttctcacaagtttggttctgttgat
cctatttctggtaaagagactgatgatgatggtggacagtttgtttcaagtgtgtgctgg
agaccgaaatctgacatgcttgtggctgccaattccactgggtgtataaaagtgctgcag
atggtttaa
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