KEGG   Diospyros lotus (date-plum): 127812525
Entry
127812525         CDS       T10632                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
dlt  Diospyros lotus (date-plum)
Pathway
dlt03030  DNA replication
dlt03410  Base excision repair
dlt03420  Nucleotide excision repair
dlt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dlt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    127812525
   03410 Base excision repair
    127812525
   03420 Nucleotide excision repair
    127812525
   03430 Mismatch repair
    127812525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dlt03032]
    127812525
   03036 Chromosome and associated proteins [BR:dlt03036]
    127812525
   03400 DNA repair and recombination proteins [BR:dlt03400]
    127812525
DNA replication proteins [BR:dlt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    127812525
  DNA Replication Termination Factors
   ELG1-RFC complex
    127812525
Chromosome and associated proteins [BR:dlt03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    127812525
DNA repair and recombination proteins [BR:dlt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     127812525
  Check point factors
   HRAD17(Rad24)-RFC complex
    127812525
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase AAA_lid_RFC1 nSTAND_NTPase5 Rad17 Viral_helicase1 AAA_16 RuvB_N RCF1-5-like_lid AAA_5 AAA_11 AAA_assoc_2 AAA_25 nSTAND3 AAA_19 DNAX_ATPase_lid AAA_18 AAA_28 ABC_tran IstB_IS21 MeaB AAA_24 DNA_pol3_gamma3 AAA_30 AAA_3 NTPase_1 bpMoxR RNA_helicase AAA_7 DUF851 AAA_29 DO-GTPase1
Other DBs
NCBI-GeneID: 127812525
NCBI-ProteinID: XP_052208896
LinkDB
Position
11:complement(782678..786644)
AA seq 334 aa
MATSSSSSSSAHAYEIPWVEKYRPTKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGT
GKTTSILALAHELLGPNCREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGKHKIIIL
DEADSMTSGAQQALRRTMEVFSNTTRFALACNISSKIIEPIQSRCALVRFSRLSDQEILG
RLMVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP
LHVKNMVRKVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET
GFAHMRICDGVGSYLQLCGLLAKLAVVRDTAKAA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggcgacgtcttcttcttcgtcttcatcggctcacgcctacgagatcccgtgggtggag
aagtacaggccgaccaaagtggccgacatcgtcggcaacgaagatgccgtgtcgaggctc
caagtcatcgctcgcgacggcaacatgcctaatctcatccttgccggccctcctggaact
ggtaaaaccactagtatactggctcttgcgcatgagcttcttggaccaaattgtagggag
gcagttttggagctaaatgcatcagatgataggggaattgatgttgttaggaataaaatt
aagatgtttgcacaaaagaaagttacactacctccagggaagcacaagataataattttg
gatgaagctgacagcatgacatctggagcacaacaagccttgaggaggacaatggaagta
ttttcgaacacaacccgttttgctcttgcctgcaatatatcttctaaaattattgagcct
atccagagtagatgtgcccttgttcgattttcaagattatccgatcaagaaattcttggc
cgtctcatggtggtggttgaagcagaaaaggttccttatgtcccagaaggccttgaagca
atcattttcactgcggatggtgatatgaggcaggcattgaacaacttgcaagctacatac
agtggattccggtttgttaaccaagaaaatgtcttcaaggtatgtgaccagcctcatcca
ttgcatgtgaagaatatggtgcgcaaggtattagaagggaaattcgatgatgcctgtgct
ggtttgaagcagctctatgatttgggctactctcccactgacataattacaacccttttt
cgaatcatcaagaactatgatatggcagagtatttgaaactggagttcatgaaggaaact
ggatttgcacatatgagaatctgtgatggggttggatcatatcttcagctatgtgggttg
ctggctaaactggcagtggttcgggacactgctaaagcggcataa

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