Diospyros lotus (date-plum): 127814120
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Entry
127814120 CDS
T10632
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
dlt Diospyros lotus (date-plum)
Brite
KEGG Orthology (KO) [BR:
dlt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dlt03021
]
127814120
Transcription machinery [BR:
dlt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
127814120
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
COG5_N
Sigma70_r4_2
TcA_TcB_BD
Motif
Other DBs
NCBI-GeneID:
127814120
NCBI-ProteinID:
XP_052211345
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Position
12:complement(6326226..6331753)
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AA seq
560 aa
AA seq
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MVMGFKLNLKLGPPFKSPFLTNSSPRPSSCSSRGKETSYESARLSLAFVISGQSENSHND
PLRAHKYSSALQTLENDYSDKEEAKMNIDKTAHSCIQMLDDNIQMTTVEDKSSFLTSLQA
SKASASPFGLLMENLDMLEATFSDSDVGRLERDILTQLERLGALNLFLTCLSRTLESSPF
FDLSDIPTQIIKEPQMNGNADVHMGKVIVRSGKKEGRKSRRKRTSRRASGQALPPSISSQ
KDFHQADISSIKGRSNLKSRRATIARNEAEMSRGVKLVENLERIRMVLEEETGQTASSSN
WAEAAGVDVKVLHQQLHFGWYCRDELLRSARSLVLYLARNYRGLGVAHEDLIQAGNLGVL
QGAVRFDHTKGYKFSTYVQYWIRKSMSALVAQHSRGIRIPFTLSKAINQIQKARKTLNSR
HGRYPDDDEIARLTGLSLAKITSASKCLRVVGSIDQKMGHSISAKFLEFTPDASIKSPEE
TVLRQHMIKDIYDLVNNLDLRERQVLALRFGLGDHHRKSLEEIGRLFGVSKEWIRRMELR
ALSKLRHENSQKSLSHYLYL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgggtttcaagttaaatctcaaattgggccctccatttaagtcccctttcctc
accaattcctcgcctcggccttcttcatgctcgtctagaggtaaggagacttcatatgag
tcagcaaggctgtctttggcatttgttattagcggacagagtgagaattcacataacgat
cctttgagagcacataaatattcatctgctctacaaaccttagagaatgattactcagac
aaggaagaagcaaagatgaatattgacaagacggcccatagctgcatacagatgcttgat
gataacatccagatgacaactgtagaggataaatcgtcatttcttacaagcttgcaagca
agcaaggcatcagcatcaccttttggtttattgatggaaaatcttgatatgttggaggca
acattttctgattcagatgtgggaaggctggaaagggatattttgacgcaactagaaagg
cttggagctctaaatttgttccttacctgtctatccaggacccttgagtcctcacccttt
tttgatttgtctgacattccaactcagattattaaagagcctcaaatgaatggcaatgca
gatgttcacatgggtaaggttattgttcgctctggaaagaaggaaggaagaaaatcaaga
agaaagagaacttcaagaagagcttctggacaggcattgccaccatcaatatctagtcaa
aaggattttcatcaagctgatatctcctctataaaaggacgatcaaacttgaaaagtaga
agagctactattgctaggaatgaagctgaaatgtcaaggggtgttaagttggttgagaac
ttggaaagaatcagaatggtactagaagaagaaactggacaaacagctagctcgagtaac
tgggcagaagctgctggagtagatgtgaaggtgttgcatcagcagctgcattttggttgg
tattgtagggatgagcttctgagaagtgcaaggtccctagttttataccttgcacgaaac
tacaggggacttggagtggcccatgaagatttaattcaggcaggaaatttaggtgtcctg
caaggtgcagtaaggtttgatcacaccaagggttataaattctcaacttatgttcagtac
tggataaggaaatcgatgtcagcattggtggcgcagcattcaaggggaattaggattccg
ttcactttaagcaaggcaataaatcagatacagaaagctcgaaagaccctaaacagccgc
catggtagatacccagatgacgatgaaattgcaaggttaactggattgtccttggccaag
ataacttcagcaagcaaatgcctgagagttgtgggttctattgatcagaaaatggggcat
tcaatcagtgctaagtttttggagtttacaccagatgcatcgataaagagccctgaagaa
actgttttgaggcaacatatgataaaagacatttatgatctggtgaacaacctggatctg
agagagaggcaagtcctggccctgaggttcgggctcggcgaccatcatcgcaagtcgctc
gaggagattggcaggcttttcggtgtgagcaaggagtggataaggaggatggagctcaga
gctctgtcaaaactaaggcatgaaaattcccagaaaagtttgagccactatttgtacttg
tag
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