Dietzia lutea: A6035_05655
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Entry
A6035_05655 CDS
T05442
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dlu
Dietzia lutea
Pathway
dlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6035_05655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dlu03019
]
A6035_05655
03009 Ribosome biogenesis [BR:
dlu03009
]
A6035_05655
Enzymes [BR:
dlu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A6035_05655
Messenger RNA biogenesis [BR:
dlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6035_05655
Ribosome biogenesis [BR:
dlu03009
]
Prokaryotic type
rRNA processing factors
A6035_05655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Extensin_1
S1
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AWH91723
UniProt:
A0A2S1R619
LinkDB
All DBs
Position
1277145..1280996
Genome browser
AA seq
1283 aa
AA seq
DB search
MSDPNLTIDDLAALPERMRAHAAAKAVGMTSKEFLAAMAGIGVEIKSAQSGVTRDVLLTW
FNSRSDAPAGDAAVGRVAPAAEQSATEQPADAAEATAAEAPAAEAPAKKAPARKAAAKKS
AAKKSPAEKAPANEAPARKTAAEATGADVAPDEGETAGTGSARKASARKSPARKTTAEKT
AEKATAAEKSAARTADETIPAEDTRSGAAGTGSGKADARNRPPLPEIAIVTGEVGAAEPG
NRRRRSTATPSFSPLFLSPEDTAAATEKADSTAQSDSTAQSDSTSRADSTEQSESGDGGT
RRRRRGRRGRGRGRGEGVDEQNGQDTASGPDAGTARSDDADSDDSDADDRSAATAPSGDS
DVADASEDAGTTGRGTGRDRSDDAADRTADDAADRTADDADGQDDSGDDDGDESDDSSGA
PSGSRRRRRRRRRGGGSGADDVQTSSDDPPHTEVHERDPRRRTGRGGQGSGTSPDEVQGI
TGSTRLEAKRQRRRDGREAGRRRQPILSEAEFLARREAVDRVMVVREKQRTDGKGLMTQV
GVLEDKVLVEHFVTTESARSMVGNVYLGRVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWE
AAGLGGKARRIEQALKSGDMVLVQVTKDPVGQKGARLSTQISLAGRFLVYVPDGNSTGIS
RKLPDTERRRLKGILKEVVPEGSGVIIRTAAEGVSAEEIGRDVERLAAQWTEISEAAAKR
TDSGSGTPVALYEEPDLLVKVVRDLFNEDFSKLVIQGETSWNTVHGYVSRVAPEMVERLE
RHDNPDVDVFATHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKYTGSGGNL
EETVTKNNLEAAEEIVRQLRLRDVGGMVIIDFIDMVLEANRDLVLRRLTEALGRDRTRHQ
VSEVTSLGLVQLTRKKLGTGLVEAFSTPCEHCQGRGLIVHADPLHTESHNADEPGAKRGR
RRGGNGNGNGKGSGESDSGAPKQAPRKDGPAPAAHPAALAIARQNAEADAGGTDAAGTAT
TDPVGASPTEADDSRSAGQKASADTGSADQKVADAAAPVVVTAPPAEAGAAEARADEADA
PSATSAAGAAAATPAAEATSTAGETAPAAVPEASEADSSDAVGVTRPARRRRASRRAASN
APAPETAAADTAATEVVETPQAESEAVAEADTVVDEVESATSGGGAAAGASTGATATDAA
SGQRPRRRSTRREAGAAAADTAVTGSAAGAATAASAAPAASGEPPAEVEAAPLAQAPTAV
VAEPRKRPARRRATRSTTAPTSD
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggatccgaacctgacaatcgacgacctcgccgcgctgcccgagaggatgcgcgcg
cacgccgcggccaaggccgtgggcatgaccagcaaggagttcctggccgccatggccggg
atcggggtggagatcaagagcgcccagtccggcgtgacccgggacgtgctgctgacctgg
ttcaacagccgttccgacgcgccggccggtgacgccgcggtcggccgggtggcccccgcc
gccgagcagtccgccaccgagcagcccgccgatgcggcggaggccacggcagcggaggct
cctgccgcagaggcgcccgcgaagaaggccccggcgcgcaaggccgccgccaagaagtca
gcggcgaagaagtctcctgcggagaaggcccctgcgaacgaggccccggcgcgcaagacc
gccgccgaggcgacgggagcggacgtggcccccgacgagggggagacggccgggaccgga
tccgcccggaaggcgtccgcccgtaagagtccggcgcgcaagaccaccgccgagaagacc
gccgagaaggccaccgcggcggagaagagcgccgcaaggaccgccgacgagaccatcccg
gccgaggacacccgctcgggggccgccggcaccgggagtggaaaggccgacgcgaggaac
aggccgccgctgccggagatcgcgatcgtcaccggcgaggtgggcgccgccgagcccggc
aaccgtcgtcgtcgctccaccgcgaccccctcgttctcccccctgttcctctcgcccgag
gacaccgccgcggccaccgagaaggccgactcgaccgcgcagtcggactccacggcgcag
tccgactcgacgtcgcgggccgactcgaccgaacagtccgagtccggtgacggcggcacc
cgtcgtcgtcggcgtggccgtcggggccgcggccgcgggcgtggtgagggcgtcgacgag
cagaacggccaggacaccgcctccggtccggacgcgggcaccgcccggtccgacgacgcc
gacagtgacgacagtgacgccgacgaccgctccgcagccaccgcgccctccggggactcc
gacgtcgccgacgcgtccgaggacgccgggacgacgggccgcgggacgggccgcgaccgc
tccgacgacgccgcggaccggacggccgacgacgccgcggaccggacggccgacgacgcc
gacgggcaggacgattccggagacgacgacggagacgagtccgacgactcctcgggcgcc
ccgtcgggctcgaggaggcgtcgccgtcgtcgtcgtcgcggcgggggttccggcgccgac
gacgtccagacgtccagcgacgacccgccccacacggaggtccacgagcgcgacccacgc
cgccgcaccggacgcgggggacagggctccggcacgtcccccgacgaggtccagggcatc
accggctcgacccgactcgaggccaagcgccagcgtcggcgcgacggccgtgaggccggc
cgccgccgccagccgatcctgtccgaggccgagttcctcgcccgccgcgaggccgtggac
cgcgtcatggtggtccgcgagaagcagcggaccgacggcaagggcctcatgacccaggtc
ggcgtcctcgaggacaaggtgctcgtcgagcacttcgtcaccaccgagtccgcccgctcg
atggtcggcaacgtctacctcggccgcgtgcaaaacgtcctgcccagcatggaggcggcg
ttcgtcgacatcggacgcggccgcaacggcgtgctctacgccggcgaggtcaactgggag
gccgccgggctcggcggcaaggcccggcgtatcgagcaggcgctcaagtccggcgacatg
gtgttggtccaggtcaccaaggaccccgtcgggcagaagggcgcccgcctgtcgacccag
atctcgctggccggccggttcctcgtctacgtccccgacggcaactccaccggcatctcc
cgcaagctgcccgacaccgagaggcgccgcctgaaggggatcctcaaggaggtcgtcccc
gagggctccggcgtcatcatccgcaccgccgccgagggcgtcagcgccgaggaaatcggt
cgcgacgtcgaacggctcgccgcgcagtggaccgagatctccgaggcggccgccaagcgc
accgactccggctccggcacgcccgtcgcgctgtacgaggagcccgatctgctggtcaag
gtcgtccgcgacctgttcaacgaggacttctccaagctcgtcatccagggcgagacgtcc
tggaacacggtccacggctacgtctcgcgcgtcgcacccgagatggtcgaacggctcgaa
cggcacgacaatcccgacgtggacgtgttcgcgacccaccgtgtcgacgagcagctggcc
aaggcgctcgaccgcaaggtgtggctgccgtccggtggctccctggtgatcgaccgcacc
gaggccatgaccgtcatcgacgtcaacaccggcaagtacaccggttccggcggcaacctc
gaggagaccgtcaccaagaacaacctcgaggccgccgaggagatcgtgcgtcagctgcgc
ctgcgcgacgtgggcggcatggtgatcatcgacttcatcgacatggtcctcgaggccaac
cgcgacctcgtgctgcgccgactcaccgaggcgctcggccgcgaccgcacccggcaccag
gtctccgaggtcacctcgctcggcctggtccagctcacccgcaagaagctgggcaccggc
ctggtcgaggcgttctccacgccgtgcgagcactgccagggccgcgggctcatcgtccac
gccgaccccctccacaccgagtcgcacaacgccgacgagccgggcgccaagcgcggacgt
cgtcgcggcggcaacggcaacggaaacggcaagggttccggggagtccgactcgggcgcg
cccaagcaggcaccgcgcaaggacggccccgcgccggccgcccacccggccgcgctggcg
atcgcccggcagaacgccgaggccgacgccggcggtaccgacgccgcgggcacggccacg
accgaccctgtgggcgcatcgccgaccgaggccgacgactcccgctcggccggtcagaag
gccagcgccgacaccggttcggcggaccagaaggtcgccgatgccgccgcacccgtcgtg
gtgaccgccccgccggccgaggccggtgctgccgaggcccgtgctgacgaggccgacgcc
ccgtcggcgacgtccgcggcaggggccgcggccgcgaccccggcggcggaggcgacctcc
actgccggcgagaccgctcccgcggcggtccccgaggcgagtgaggcggactcctccgac
gccgtgggcgtcacccgccccgcgcggcggcgtcgcgcgtcgcggcgggcggcgagcaac
gctcccgccccggagaccgccgccgcggacaccgccgcgaccgaggtcgtcgagacaccg
caggccgagtccgaagcggtggccgaggccgacacggtcgtggacgaggtcgagtccgcg
acgtcggggggcggggccgcagccggcgcgtccaccggcgccacggccaccgacgccgcg
tccggccagcggccccggcgccggtcgacccgtcgcgaggcgggtgccgccgcggcggac
accgcggtgaccgggagcgcggccggcgccgccacggcggcgtctgcggctccggcggcc
tcgggcgaacccccggccgaggtcgaggccgcgccgctggcgcaggcgccgaccgccgtg
gtcgccgagccgcgcaaacgccccgcgaggcgacgcgcgacccggtcgacgacggctccc
acgagcgactga
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