Dehalogenimonas lykanthroporepellens: Dehly_0632
Help
Entry
Dehly_0632 CDS
T01264
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dly
Dehalogenimonas lykanthroporepellens
Pathway
dly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dehly_0632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dly03400
]
Dehly_0632
Enzymes [BR:
dly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dehly_0632
DNA repair and recombination proteins [BR:
dly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dehly_0632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADJ25940
LinkDB
All DBs
Position
complement(595357..598803)
Genome browser
AA seq
1148 aa
AA seq
DB search
MNSDLHWLLPHLRQDLAYKKLYEHLSSKQQQLDITVLDAVRPILIAALFQEINQSLLIVT
HNHERARKIEEQLSLFVPDGQIRLFPYFEFAPFNHEIIDIDLDNEIIRFLSTVFGQNNDR
PQVIIVSIDALVRLLPAPSDFSAISLSVFPGLDISPESICKQLDTFGYRYENISDTPGTY
SRRGGILDIFPPGSDAPVRLEFFGNNIETLRIYDPASQLTKKHIEFATVGPASLILKPQK
ISTVLGSSPIEWKNLALIDEYNSLVNGKQPEYSRFWQPFYNQSTILDYLHSKTIILLDSP
ELIDQKWAFISSETELRRQERISCGAIPDNYPWPFMDWDQLKQSFSTHSIVGLLGWKAIQ
QQLCFDVSPAPSYVGKLNSFFQSAHERVINGKTVVIAGYQKARIEDLLTENNINFIRTSP
QNHITNTPGSVILSSTQLDKGFLLGDQISIFTDLELFGFSKIPRQRRLPSVAKTPHVSDL
SKGEYIVHVEHGIGIYRGIVKTKAAGSVSDYILIEYSKGDRLYVPVDQIGRISQYIGATG
KNPKLNTLGSEDWNRAKRTAENAADEIAEEFLQLYAARHAAVGFQYSEDTIWQRELEDSF
PYTETSDQLQAIDEIKKDMEQPQPMDRLVLGDVGYGKTEVALRAAFKAVMDNRQVAILVP
TTVLAQQHYSTFSHRLAAFPITIDSLSRFRTDTEQSSIIERLASGSIDIIIGTHRLLQGD
VKFKHLGLVIIDEEQRFGVLHKDYFKKLRKEIDILTLSATPIPRTLELSLSGIKDISIID
TPPQERHPVKTVVSSFDEYLIKDAIISEMERNGQIFFVHNRIVDIFRIANQLRNIVPEAS
IQVAHGQMSERELEQVMSSFVDGDIDVLVCTTIIESGVDIPNANTIIINDADKLGLTQLY
QLRGRVGRSTQSAFAYLLYDKNREFKGNSAQRLQTIYEAASLGSGYTIALKDLEIRGAGT
LLGSKQSGQISAVGFHLYSELLKEAIAAKQKLILPKQPQPDNARRIKPPIIDAPLNAYIP
ESYITDESERLNYYRVLSSTDSLSDLDKLTVELTDRFGKAPPELTDLFFVSRLRILGRQA
GIRRVAITADNMRLEFHNSVDPKWFEEVVQGSRVVSGKRSVDIRFDSKPLWNDQAERILW
HLSKKRAC
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgacttacactggcttctgccgcatctgagacaggacttggcctacaaaaag
ctgtatgaacatttatcttctaaacaacagcagcttgatatcaccgtcttggatgctgtc
aggccaattcttatagcggctttatttcaagaaatcaatcaaagtttgctgatagttact
cacaaccacgaaagagctaggaagattgaagaacaactttccttgtttgtacctgatggg
caaatacggctatttccatattttgagttcgccccttttaatcatgaaataattgatatt
gacttggacaacgaaataatcaggttcttatcaactgtttttggccagaataacgatagg
ccacaggtaatcatagtttccattgatgccctagtccggttattgccagcgccttcggat
ttctccgcaatcagccttagtgtgtttcctggtctggatataagtcctgaaagcatctgc
aaacaactcgacacctttgggtacagatatgagaatatttcagataccccgggtacatat
tcgcgacgcggaggcattctggacatatttcctcctggaagtgatgccccagtccggttg
gagtttttcggcaacaacattgagaccctaaggatttacgaccctgcttctcagctgaca
aaaaagcatatcgaatttgctacagtaggcccggccagtcttatattaaaaccccaaaag
atatcaacagttttaggatcatcgccgattgaatggaaaaacctcgccctgatagatgaa
tataattctctggttaatggaaaacagcctgaatactcccgcttctggcaaccgttttat
aatcaaagtacgatcttggattatttacattcaaaaacaataatattattagattcaccg
gagctgatagaccagaaatgggcgttcatatcctctgaaacagagttgcgccgtcaggaa
cgtatttcctgtggtgcaatcccggacaattatccctggccatttatggattgggatcag
ttgaaacaaagcttttccactcattcaatagtcggtcttctaggatggaaggcaattcag
caacaattatgttttgacgtttctcccgctcccagttatgtaggcaagctcaattcattt
tttcagagtgctcatgagagggtcataaatggtaaaaccgttgtcatcgccggttatcaa
aaagctagaattgaagacttgcttacggaaaataatattaattttatcagaacttcaccc
caaaaccatataaccaatacacccggatcggtaatccttagctccactcaactggataaa
ggatttttattaggtgaccagatatcaatttttactgaccttgaacttttcggtttttcc
aaaattccgagacaacgcagattaccctcagttgcaaaaacgccacatgtttccgattta
tcaaaaggtgagtatatagtccacgtcgaacatggaataggtatttatcgaggaattgta
aaaaccaaagccgctggctcggtcagcgactatatacttattgaatactccaagggcgat
cgtttgtacgttccagtcgatcagattgggaggatttcccaatatatcggtgctaccggc
aaaaacccaaaattgaacacgctgggttccgaggattggaatagagccaagagaacggct
gaaaacgcggctgacgaaattgccgaggaatttctacagctatatgccgcgcgacatgct
gccgtcggatttcaatattcagaagatacgatatggcaacgtgaactggaggattctttc
ccttataccgaaacgtccgatcaactccaggctattgatgaaatcaagaaagacatggag
cagccccaaccaatggatcgactcgtgttgggcgatgtcggttatggaaaaacagaagtg
gctctacgagcagctttcaaagcggtgatggataatcgacaggtagcgatattggtaccg
acaacagtacttgctcaacagcattattcgactttttctcatagattagcggcttttccc
attaccatcgattcattgagtcgttttcgtacggataccgaacaatcctcaattattgaa
cgcctggcatcaggcagtatcgatatcatcataggaacccatcgtttattacagggcgat
gtgaaattcaagcaccttggcttggtaatcattgacgaagagcagagattcggtgttctt
cacaaagactattttaaaaaattacgcaaagaaatcgacatcctgactctttcagctaca
ccgattcctcgtacgttggaactgtcattgagcggtattaaagatattagtataattgac
acccctccccaagagagacaccctgttaaaactgtggtttcgtctttcgacgaatatcta
atcaaggacgctataatttctgagatggagcgaaatgggcaaatattctttgtgcataat
cgtattgtggatatattccgtatcgccaatcaattaaggaatattgttccggaagcttca
atacaagtagcccatggccagatgtcggagagagaattggaacaggttatgtctagtttt
gtcgacggcgacattgacgtactcgtctgcaccacaataattgagagtggcgtagatatt
ccaaacgccaacaccatcatcatcaacgatgctgataaacttgggttaacccaattatat
caattaagaggaagggttgggcgtagcacccaatcagcatttgcttacttgctctatgat
aagaatcgtgaattcaaaggcaattcagcacaacgccttcagactatttatgaggctgca
tcacttggctcgggttacactatcgctctcaaggatttggaaatccgtggtgccgggaca
ttattgggatctaaacaaagcggacaaatcagcgcggtagggttccatctttattcggaa
ttgcttaaagaggcaatagccgcgaagcagaagctcatccttccaaaacaacctcaacca
gataatgcccgccgaatcaaaccaccaatcattgacgcgccactaaatgcgtatattccc
gagagttatataactgatgagtcggaaagattaaattattatcgggttttatcatcaacc
gattcattatccgacttggataaattaactgtcgaactcacggaccgattcggaaaagcc
cccccggaattgacagatctgtttttcgtttctcgactcaggatacttggaagacaagcc
ggtattagaagagtcgcaattacagcggataatatgaggctggaattccataatagcgtt
gacccaaaatggtttgaagaagtcgttcagggctcccgtgtagtttcaggaaagcgttcc
gttgatattcgctttgattcaaagccactctggaacgatcaagctgagagaatactatgg
catttgtcaaagaaaagagcatgttaa
DBGET
integrated database retrieval system
