Solidesulfovibrio magneticus: DMR_03280
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Entry
DMR_03280 CDS
T00917
Name
(GenBank) putative ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dma
Solidesulfovibrio magneticus
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dma03016
]
DMR_03280
Enzymes [BR:
dma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DMR_03280
Transfer RNA biogenesis [BR:
dma03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DMR_03280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BAH73819
UniProt:
C4XH51
LinkDB
All DBs
Position
376881..378983
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AA seq
700 aa
AA seq
DB search
MALERYVGPGCLVEFMQGNQAQVAWVLEESSGRLRVYTLTHREEKMAMARVLPWMGPRYD
GARDRSAISEILAGHQAKREAAAKAIAPLELWELAQGEVREESAEWFAGLVGEKPDVDAV
AGMGRALLGCKTHFKFHAPKFEVYSAETVERRLTEAAAAEEREKVVVAGQVFFKELWHGW
ATGDRKKGAALAAKLDPEAAAKLAAMLRRLMADADDQESAVLWAMLRKGLPDHPLQAYIL
ATQWGIVPPHYNYHLDQADYVAGDDWHAPYAAEIEARRAGLAALSREPEPIPFVSIDSPT
TRDIDDAFFAETRPDGTIRLVLALADPALDWDFGGPLDTAVAHRASSLYLPEGVSHMLPE
CLGTDLYSLRAGDVRPSLVMEWDFSPEGEIVGFAMRKTFVRVAENTTYAVVEAALDRGDA
APHLQLGWRVASWLRAKRLERGAVIIERPEPEISLSGYPDDVKIEMSVCPAYPKAQLLVS
ELMILGNAAAADYAVSHGAAMLFRTQDARLPPEVRGIHSDPPAIQRAVRELPPTLTEPDP
RPHATLAAPAYAPVTSPLRRYADLINLAQLEALLRTGAPRWSRGELEARLPLLSSRIEAV
GRVQRFRPRYWKLAFLQRHCKERTFEGVVVDVAGGFISLSLPDFQIYVRATRDTLGDTIY
TGQRYALRLGRIDPLTNELRVFGAEEIPASLPDEQLFGEG
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgttggaacgctacgtcggcccggggtgtctggtggagttcatgcagggcaaccag
gcgcaagtggcctgggtgctggaagagtcttcgggccggctgcgagtgtatacgctcacg
catcgcgaggaaaaaatggccatggcccgggtgctgccctggatggggccgcgctatgac
ggggcccgcgaccgcagcgcgatttccgagatcctggctggtcatcaggccaaacgcgag
gccgcggccaaggccatcgcccccctggagctgtgggagctggcccagggcgaggtgcgc
gaggaatcggccgaatggttcgccggccttgtgggcgaaaaacccgatgtcgacgccgtg
gccggcatgggccgggcgcttttgggctgtaagacccatttcaagttccacgcccccaag
ttcgaggtctattccgccgagaccgtggagcgccgcctcaccgaagccgccgccgccgag
gaacgcgaaaaggtggtcgtggccggccaggtctttttcaaggaactctggcacggctgg
gccacgggcgaccgcaagaagggcgcggccctggccgccaagcttgatcccgaggcggct
gccaagctggccgccatgctgcgccggctcatggccgacgccgacgaccaggaaagcgcc
gtgctgtgggccatgctgcgcaagggcctgcccgaccatcccctccaggcctatatcctg
gccacccagtggggcattgtcccgccgcattacaattaccatctcgaccaggccgactac
gtcgccggcgacgactggcacgcgccctacgccgccgagatcgaggcccgccgggccggg
ctggccgcgctttcccgcgagcccgaacccatcccctttgtcagcatcgattcccccacc
acccgggacatcgacgatgcctttttcgccgagacccgccccgatggaaccatccggctg
gtcctggccctggccgacccggccctggattgggacttcggcggccccttggacacggcc
gtggcccaccgggcttcgagcctctatctgcccgagggcgtgagccacatgctgcccgag
tgcctgggcaccgacctttacagcctgcgcgccggggacgtgcggccgtcgctcgtcatg
gagtgggacttttcccccgaaggcgagatcgtgggcttcgccatgcgcaagacctttgtc
cgggtggcggaaaacaccacctacgccgtggtggaagcggccctggaccggggcgacgcc
gcgccccatctgcagctcggttggcgcgtggcctcctggctgcgggccaagcgcttggag
cgcggagcggtcatcatcgaacgccccgaacccgagatcagcctgtcgggctaccccgac
gacgtcaaaatcgagatgtcggtctgcccggcctatcccaaggcccagctcttggtcagc
gaactcatgatcctgggcaacgccgccgccgccgactatgccgtgtcccacggcgcggcc
atgctctttcgcacccaggacgcgcgcctgccgcccgaggttcgcggcattcacagcgat
ccgccggccatccagcgggccgtgcgcgaactgcccccgaccctgaccgaacccgatccc
cggccccacgccaccctggccgcgccggcctacgctccggtcacttcgccgctgcggcgc
tatgccgacctcatcaacctggcccagctcgaagccctgctgcgcaccggtgcgccgcgc
tggagccggggggagctggaagcccggctgccgctgttgtcttcgcgcatcgaggccgtg
ggccgggtgcagcgtttccggccgcgctactggaagcttgcctttctgcagcgccactgc
aaggaacggacgtttgagggcgtggtggtggacgtggccggcgggttcatctccctgtcc
ctgcccgatttccagatttacgtccgggccacccgggacaccttgggcgatacgatttac
accggccagcggtatgcgctacgcttggggcgtatcgatccgctcaccaacgaactgcgg
gtgttcggcgcggaagagattccggccagcctgcccgacgaacagcttttcggagagggc
taa
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