Solidesulfovibrio magneticus: DMR_13640
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Entry
DMR_13640 CDS
T00917
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dma
Solidesulfovibrio magneticus
Pathway
dma03030
DNA replication
dma03430
Mismatch repair
dma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DMR_13640 (dnaE)
03430 Mismatch repair
DMR_13640 (dnaE)
03440 Homologous recombination
DMR_13640 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dma03032
]
DMR_13640 (dnaE)
03400 DNA repair and recombination proteins [BR:
dma03400
]
DMR_13640 (dnaE)
Enzymes [BR:
dma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DMR_13640 (dnaE)
DNA replication proteins [BR:
dma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DMR_13640 (dnaE)
DNA repair and recombination proteins [BR:
dma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DMR_13640 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
BAH74855
UniProt:
C4XMR4
LinkDB
All DBs
Position
1497504..1500968
Genome browser
AA seq
1154 aa
AA seq
DB search
MPDFVHLHCHTEYSLLDGAIRIGDLVKTAKSFNSPAAAITDHGNLHGALIFYDAAKKAEL
KPIIGCEVYVSPTSRRDRDPRTPRYHLVLLAQNMTGYKNLLKLATLGHTEGMYYKPRVDK
ELLGQYGEGLIALSACIKGEINQKLLKEGKDQARAMAKEYASLFPDRFYLEIQANEIPEQ
AIINDFLIDLSDDMGLPLVATNDCHYLRADDAEAHDVLLCIQTAACVDDVKRMRFTTQDL
YYRSPDEMAAAFAHVPQAIANSCEIAERINLQLKFGDYHFPVYKSPPGKSLDEVMADLAR
KGLTERLSKMQGADPKRYWDRLELELDVIKQMGFPGYFLIVQDFINWAKNHGIPVGPGRG
SAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCERRRHEVIRYVTEHYG
EEAVAQITTFGTMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIDKALAQEPELKT
LMAQDGRVAKLIDVSRRLEGLARHASTHAAGVVVSDTAMTEYVPLYKGKNNETVTQWDMK
RVEKAGLVKFDFLGLKTMTVIDDTLQIIREMGEEPPDLDTLPFTDEATYELFAKGDTDGI
FQVESQGMRKYLRMLKPNCFEDIIAMLALYRPGPLGSGMVELFIRRKHGEDPVEYPHPLL
EETLKPTYGVIVYQEQVMKIAQVLANFSLGAGDLLRRAMGKKNAEEMGKQRGFFVEGCAQ
NDIPEKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLKAHYPVAFMAALMTSDMEN
QDKLLQYIAACRDNDLTLLPPDVNAGYPHFSVKDNKILYGLAAVKNVGRDAVAEIVAARE
EGGPFTSLLDFTSRVNMRKITKRVIEYLIKCGACDSFGCTRAGLAAGLDQAAAIGQRRAA
EKNDGRLSLMTLMPEKPKPTVGLGLSCAEAELPEWHHEEMMAFEKEALGFYLTSHPLLAY
ERDLRAMRLTTIAQCDGMEPGVEVKLACICVSTKEIITKKGQKMAFCKLEDHLGGEAEAV
VFSDVYAACREHLDADVPLYLTAKIGNVDQGEGEGKKIIKLQAVRLDPLVNIVSGSDEPI
EIFVACKDEQPVGLGPLGEILKRYPGENSVHLIMNLPKAVCRLRLGHHYGVKRCPELRRE
LDAFEQGVLGRQQA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatttcgtgcacctgcactgccataccgagtacagcctcctcgacggagccatc
cgcatcggcgatctggtcaagaccgccaaaagcttcaattcgccggccgccgccatcacc
gaccacggcaacctccacggcgcgctcatcttctacgacgcggccaagaaggccgaatta
aagcccatcatcggctgcgaggtctacgtttcgccgacctcgcgccgcgaccgcgatccg
cgcacgccgcgctaccatctggtgcttctggcccagaacatgacgggctacaaaaacctg
ctcaagctggccacgctgggccacaccgagggcatgtactacaagccccgcgtggacaag
gagctgcttggccaatacggcgaggggcttattgccctttcggcctgtatcaagggcgag
atcaaccagaagctgctcaaggaaggcaaggaccaggcccgggccatggcgaaagagtac
gccagccttttcccggaccgtttttatctcgaaatccaggccaacgagattcccgaacag
gccatcatcaacgattttttgatcgatttgtccgacgacatgggcctgcccctggtggcc
accaacgactgccactatctgcgcgccgacgacgccgaagcccacgacgtgctgttgtgc
atccagaccgccgcctgcgtggacgacgttaagcggatgcgcttcaccacccaggatctt
tattaccgctccccggacgagatggccgctgcctttgcccatgtgccccaggccatcgcc
aattcctgcgagatcgccgagcgcatcaatctccagctcaaattcggggactaccatttt
ccggtctacaaatccccgcccggcaagtccctggacgaggttatggccgatttggcccgc
aagggcctgaccgaacgcctgtccaagatgcaaggcgccgaccccaaacgctactgggac
cggctggagctggaactcgacgtcatcaagcagatgggcttcccgggctatttcctcatc
gtccaggacttcatcaactgggccaagaaccacggcatccccgtcggccccgggcgcggc
tcggcggccgggtcgctggtcgcctacgcccttcgcatcaccaaccttgatcccttgccc
tacgatctgctcttcgagcggtttcttaatatcgagcgcgtgagcatgcccgatatcgac
gtggatttttgcgaacgccgccgccacgaggtcatccgctacgtcaccgagcattatggt
gaagaggccgtggcccagatcaccacctttggcaccatgaaggccaaggccgtggtgcgc
gacgtgggccgggccttgggcatgagctttggcgagaccgaccgcatcgccaagctcatc
cccgaagacctgaaaatgaccatcgacaaggccctggcccaggagccggagctgaaaacc
ctcatggcccaggacggccgggtggccaagctcatcgacgtctcgcgccgtctggagggt
ctggcccgccacgcctccacccacgccgccggcgtggtcgtgtccgacacggccatgacc
gagtatgtgccgctgtacaagggcaagaacaacgaaaccgtgacccagtgggacatgaag
cgcgtggagaaggccggactggtgaagttcgacttcctgggcctcaagaccatgacggtc
atcgacgacacgctccaaatcatccgcgagatgggcgaggagccgcccgacctcgacacc
ctgccctttaccgacgaagccacctacgagcttttcgccaagggcgacaccgacggcatc
ttccaggtggaaagccagggcatgcgtaagtatttgcggatgctcaagcccaactgcttc
gaggacatcatcgccatgctggcgctgtatcgcccggggccgctggggtcgggcatggtc
gagcttttcatccgccgcaagcacggcgaagacccggtcgagtacccgcatccgctcctg
gaagagacgctgaaacccacctacggcgtcatcgtctaccaggaacaggtcatgaagatc
gcccaggtgctggccaacttttcccttggcgcgggcgacctgctgcgccgggccatgggc
aagaaaaacgccgaggagatgggcaagcagcgcggctttttcgtcgaaggctgcgcccaa
aacgacatccccgagaagaaagccaacgaaatctttgacttgatggagaagttcgcggag
tacggcttcaacaagtcccacagcgccgcctacgcgctcatttcctatcatacagcgtat
ttgaaggcccactatccggtcgccttcatggccgcgctcatgacctcggacatggaaaac
caggacaagttgctgcagtacatcgccgcctgccgcgacaacgacctgacgctcttgccg
cctgacgtcaacgccggctatccgcacttttcggtcaaggacaacaagatcctctacggc
ctggccgccgtgaaaaacgtcggccgcgacgccgtggccgagatcgtggccgcccgggaa
gagggcggccccttcacctcgcttctggatttcacctcgcgcgtcaacatgcgcaagatc
accaagcgggtcatcgaatacctcatcaaatgcggggcctgcgacagcttcggctgtacg
cgggccgggctggcggccggcctggaccaggccgccgccatcggccagcggcgcgccgcc
gagaaaaacgacggccggctctcgctcatgacgcttatgcccgaaaagcccaagcccacc
gtgggcctgggcctttcctgcgccgaggccgaactgcccgagtggcaccacgaagagatg
atggcttttgaaaaagaggccctgggcttttacctcaccagccatccgcttctggcctac
gaacgcgatctgcgggccatgcgcctgaccaccatcgcccagtgcgacggcatggagccc
ggcgtcgaggtgaagctggcctgcatctgcgtctccaccaaggagatcatcaccaagaaa
ggccagaagatggccttttgcaagctcgaggaccatctgggcggcgaggccgaggccgtg
gtcttttccgatgtctacgccgcctgccgcgaacacctcgacgctgacgtgccgctgtat
ctcaccgccaagatcggcaacgtcgaccagggcgagggcgaaggcaaaaagatcatcaag
ctgcaagccgtgcggcttgatcccctggtcaacatcgtcagcggcagcgacgagcccatc
gaaatcttcgtggcctgcaaggatgagcagcccgtgggcttggggccccttggggaaatc
ctcaaacgctatcccggcgagaattccgtccatctcatcatgaatctgcccaaggccgtg
tgccggttgcgcctgggccaccactacggcgtcaagcgctgccccgaactgcgccgcgaa
ctcgacgccttcgagcaaggcgtccttgggcgacagcaggcttga
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