Solidesulfovibrio magneticus: DMR_16720
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Entry
DMR_16720 CDS
T00917
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dma
Solidesulfovibrio magneticus
Pathway
dma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DMR_16720 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dma03019
]
DMR_16720 (recQ)
03400 DNA repair and recombination proteins [BR:
dma03400
]
DMR_16720 (recQ)
Enzymes [BR:
dma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DMR_16720 (recQ)
Messenger RNA biogenesis [BR:
dma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DMR_16720 (recQ)
DNA repair and recombination proteins [BR:
dma03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DMR_16720 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Motif
Other DBs
NCBI-ProteinID:
BAH75163
UniProt:
C4XPI2
LinkDB
All DBs
Position
1855685..1857916
Genome browser
AA seq
743 aa
AA seq
DB search
MNTPRDVLKQVFGHDRFRGPQQAIVEHVLGGGDAVVLMPTGGGKSLCYQIPAILRPGTAI
VISPLIALMRDQVQTLSGLGVRAECLHSALPAGAAREVMASLRRGELDILYTAPERFMTQ
GFANLLAGLPLALFAIDEAHCVSQWGHDFRPEYLQLASIAHDFPGVPRMALTATADGPTR
ADILTRLELSQARVFATGFDRPNIRYLVEPKDHPRRRLLRFIREEHPGQSGIVYRLSRAK
TEDTAQWLTDNGIPALAYHAGLAPAERDRRQDRFMREEGLVMAATVAFGMGVDKPDVRFV
AHLDPPKSLEAYHQETGRAGRDGEPATALMLYSLADFAALRRLIAPEGGEGTRTRIDLSK
LDALAGYCETDCCRRQTLLGYFGEARLEPCGNCDVCLDPSQPEDATVAAQKALSCVFRTG
QRFGAGHLVDVLLGRPTTQVERFNHREVSTFGIGADLTKDHWRAIYRRLAAMGALAPDEA
GHGGLVLTPLAWEILKGQRPFAMRLPKEPPPKERRKRSRGTAGEGGGKKSWVYDHLSTPE
DAALWDRLRSWRAETAKEGGVPPYVVFHDRTLLDVVLLKPQDPAGLAGAGGMGQAKIDKY
GQTLLTMLAEHYAAHGRAAPRPALPPEAGALAPREPNDTAAKSLALFQELGSVEAVAQKR
ELAVSTIHGHLLAYVAWGKIEAANVCGLPDELMARARETLSRLRREGVPGLGAAHEALGG
AVSFEALRCIDAELRAKARDGQV
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaacacccctcgcgacgttctcaaacaggttttcggccacgaccgcttccgcggtccc
cagcaagccatcgtcgagcacgtgcttggcggcggcgacgccgtggtgctcatgcccacc
ggcggcggcaagtcgctgtgctaccagatcccggccatcctgcgcccgggcacggccatc
gttatttcaccgctcatcgcgctcatgcgtgaccaggtgcaaacgctctccggccttggc
gtgcgggccgagtgcctgcattcggccctgccggccggcgcggcccgggaggtcatggcc
agtctgcgtcggggcgagctcgacattctctacaccgccccggagcggttcatgacccag
ggtttcgccaatctcctggccgggttgcccctggccctattcgccatcgacgaggcccac
tgcgtctcccagtgggggcatgattttcggccggaatatctgcagctggcctccattgcc
catgattttcccggcgtgccccgcatggcgctgacggccacggccgacggtccgacccgg
gccgacatcctcacgcgcctggaactgtcccaggcccgggtcttcgccaccggcttcgac
cggccaaacatccgctatctggtcgaacccaaggaccatccccgcaggcggctgttgcgg
tttatccgcgaggagcaccccggccagtccggcatcgtctaccgcctgtctcgggccaag
accgaggacacggcccagtggcttaccgacaacggaatcccggccctggcctaccatgcc
ggtctggccccggccgagcgcgaccgccgccaggaccgcttcatgcgcgaggaaggtctg
gtcatggccgccaccgtggcttttggcatgggagtggacaagcccgacgtgcgcttcgtg
gcccatctcgatccgcccaaaagcctggaggcctaccatcaggagaccggccgggccggg
cgcgacggcgaaccggccacggcgctgatgctctacagtctggccgatttcgccgccctg
cgccggctcatcgccccggaaggcggcgagggcacgcgcacccgcattgatctgtccaag
ctcgacgccctggccggctactgcgagaccgattgttgccgccgccagaccttgcttggg
tatttcggagaggcccggcttgagccgtgcggcaactgcgacgtctgcctggacccgagc
caacccgaggacgccaccgtggccgcccagaaggcgttgtcgtgcgtttttcgcaccggc
cagcgcttcggggccggccatttggtcgacgtgctgctcggccggccgaccacccaggtg
gaacgcttcaaccaccgcgaggtgagcacattcggcatcggcgcggacctgaccaaggac
cactggcgggccatctaccgccgtctggccgccatgggggccctggccccggacgaggcc
ggccacgggggcctggtgctcacgccgctggcttgggagatcctcaaggggcagcggccc
tttgccatgcgcctgcccaaggaaccgccgcccaaggagcggcgcaagcgctcccggggt
accgccggggagggcggcggcaagaagagctgggtgtatgaccacctgtccacccccgag
gacgcggccctttgggaccggctgcgctcctggcgggccgagacggccaaggagggcggc
gtgccgccctatgtggtcttccatgaccgcacgctgctggacgtcgtgctgctaaagccc
caggaccctgccgggctggccggagctggcggcatgggccaggccaagatcgacaaatac
ggccagacgctgcttaccatgctcgccgagcactatgccgcccacggccgggccgcgccg
cgtccggccctgccgcccgaggccggcgcgcttgctccccgcgaacccaacgacacggcg
gccaagtccttggccctgtttcaggaactcggttcggtggaggcggtggcccaaaagcgc
gagctggccgtgtccaccatccacgggcatctgctggcctatgtggcctggggtaagatc
gaggcggcgaacgtgtgcggtttgccggacgagctcatggcccgggcgcgcgagaccctg
tcgcggctgcggcgcgagggtgtgcccggcctgggcgccgcccacgaggctttgggaggc
gcggtctcgtttgaggctctgcgctgcatcgacgccgagcttcgggccaaggcccgggac
gggcaggtgtga
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