Solidesulfovibrio magneticus: DMR_31150
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Entry
DMR_31150 CDS
T00917
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dma
Solidesulfovibrio magneticus
Pathway
dma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DMR_31150 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dma03021
]
DMR_31150 (rpoC)
03400 DNA repair and recombination proteins [BR:
dma03400
]
DMR_31150 (rpoC)
Enzymes [BR:
dma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DMR_31150 (rpoC)
Transcription machinery [BR:
dma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DMR_31150 (rpoC)
DNA repair and recombination proteins [BR:
dma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DMR_31150 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Blo-t-5
Motif
Other DBs
NCBI-ProteinID:
BAH76606
UniProt:
C4XIN8
LinkDB
All DBs
Position
complement(3525535..3529701)
Genome browser
AA seq
1388 aa
AA seq
DB search
MSLDELFSMRGIGQTAVSSRTLKSIRISIASPEKIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMVDLEKVLYFDSYLVLDPKDTNLTKFQVISEEQYIQVIDHYGGE
DALVVGMGAEAVRGLLEEIDLLTLRAELREESMTTKSQTKKKKIIKRLKVVEAFIESANK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPDIIIR
NEKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VIVVGPRLKLHQCGLPKKMALELFKPFIYSKLEEKGLATTIKTAKKMVEREELVVWDILE
DVVREYPILLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLS
VEAQIECRVLMMSTNNILSPANGTPIIVPSQDIVLGLYYLTIERSFAKGEGKIFADTGEV
ICAVDAGVVSLHARITCRINGERVKTTPGRIIVGELMPEGVPFELVNTVLNKRSIGKLVG
DTYRMAGTKATVILCDRLKDLGYEYATRAGVSIGVKDLAIPSTKAKLLTAAQNEVDDIEV
QYGEGIITRTEKYNKVVDVWTKATNDVATEMMKEISWDTLTDEASGRVEKNTSSNPIFMM
IHSGSRGNQDQMRQLAGMRGLMAKPSGEIIETPITSNFREGLSVAQYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVVQDVIITEIDCGTVDGLEITHYVKAGDIKQRVHERALGRTCM
FDVYDPVTDEVIIPTNALIDEHYAQVIEDKGFSSLMIRSTLTCQSKHGVCAMCYGRDLAR
GHLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTAAREIAQSSVTAQHSGRIVLSRVKS
IVNQQGHTIMMGKSGQVSVVDDQGRERERYSLPSGAKLYAVAGQEVKKDQLLAEWDPFNE
PFVTDVAGVIKFTDIVEGKTYQEKVDDATKRATQTIIEYRTTSYRPSVSIVDERGNPKFR
PGTNTPAIFSMPVGAILMLRDGQEVFEGDIIARKPRESSKTKDIVGGLPRVAELFEVRKP
KEMAVVSEIDGLVSFGPETKGKRKIIVTPEAGDPKEYLIPRGKHVTVQEGDFVEAGELLT
EGYPELHDILKIKGEKFLAKYLVDEIQDVYRFQGVGINDKHIEIIVRQMLKKVSILDSGE
TNFLIGEQVDKIRFMEENLRVMEEGLKPAMAEPLVLGITQASLSTDSFISAASFQETTKV
LTEASLMGKDDSLRGLKENVIVGRLIPAGTGYRRYMDSEIAVPRQPERPDRFLEELEESP
IVGSIDLD
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgtccctggacgaattgttcagcatgcgcggcatcggccagaccgccgtgtccagccgt
acgctcaaatccattcgcatttccatcgcctctcccgaaaagatccgggaatggtcgttt
ggcgaagtcaaaaagcccgagaccatcaactaccggaccttcaaacccgagcgcgacggc
ctgttttgcgccaagatcttcggaccggtcaaagactacgagtgcaactgcggcaagtac
aagcgcatgaagcaccgcggcatcgtgtgcgaaaagtgcggcgttgaagtcatcgcctcc
aaggtccgccgcgagcgcatgggccacatcgaactggccgccccggtggcccatatctgg
tttttgaagaccctgccgtccaagatcggcaccctgctcgacatgaccatggtggacctg
gaaaaggttctctatttcgactcctatctggtgctcgaccctaaggacaccaacctcacc
aagttccaggtcatttccgaggagcagtacatccaggtcatcgaccactacggcggcgag
gacgctctggtcgtgggcatgggcgcggaagccgtgcgcggcctgcttgaggagatcgat
ctgctgacccttcgcgccgagctgcgcgaagagtccatgaccaccaagtcgcagacgaaa
aagaaaaagatcatcaagcgcctcaaggtcgtcgaggccttcatcgaatcggccaacaag
cccgagtggatgatcatggaagtcattccggtcatcccgcccgagctgcgccccctggtc
cccctggacggcggccgcttcgccacctccgatctcaacgacctctaccgccgcgtgatc
aaccgcaacaaccgcctcaagcggctcattgagcttggcgcgccggacatcatcatccgc
aacgaaaagcgcatgctccaggaagccgtggacgcgctttttgacaacggccgtcgcggc
cgggccatcaccggcaccaacggccggccgctcaagtccctgtccgacatgatcaagggc
aagcagggccgtttccgtcagaacctgcttggcaagcgcgtcgactactccggccgttcg
gtcatcgtcgtcggcccccggctcaagctccatcagtgcggcctgcccaagaagatggcc
ctggagcttttcaagcccttcatctattccaagctggaagagaagggcctggccaccacg
atcaagacggccaagaagatggtcgagcgcgaagagctggtggtctgggacatcctcgaa
gacgtggtgcgcgagtatccgattcttttaaaccgcgccccgacgctgcaccgcctgggc
atccaggcctttgagccgacgctggttgaaggcaaggccatccagctgcatccgctcgtc
tgctcggcctacaacgccgacttcgacggcgaccagatggccgtccacgtgcccctgtcc
gtggaagcccagatcgaatgccgcgtgctcatgatgtccaccaacaacatcctgtcgccg
gccaacggcacgcccatcatcgtgccgtcccaggacatcgtcctggggctgtactacctc
accatcgagcgcagcttcgccaagggcgagggcaagatcttcgccgacaccggcgaggtc
atctgcgccgtggacgccggggtggtgagcctgcacgcccgcatcacctgccgcataaac
ggcgagcgggtcaaaaccacgccgggccgcatcatcgtcggcgaactcatgcccgagggc
gtgcccttcgagctggtcaacaccgtgctcaacaagcgcagcatcggcaagctcgtgggc
gacacctaccgcatggccggcaccaaggccacggtcatcctgtgcgaccgcttaaaagac
ctcggctacgagtacgccacccgagccggcgtctccatcggcgtcaaggatctggccatc
ccgtccaccaaggccaagctcctgaccgccgcccagaacgaagtggacgacatcgaagtc
cagtacggcgagggcatcatcacccgtaccgagaaatacaacaaggtcgtcgacgtctgg
accaaggccaccaacgacgtggccacggaaatgatgaaggagatctcctgggatacgctc
accgatgaagcctcgggacgggtggagaaaaacacctccagcaacccgatcttcatgatg
atccactccggatcgcgaggcaaccaggaccagatgcgccagctggccggcatgcgcggc
ctcatggccaagccgtcgggcgaaatcatcgagacgcccattacctcgaacttccgcgag
ggcctctcggtcgcccagtacttcaactccacccacggcgctcgtaaaggtctggccgac
acggcgctcaagaccgccaactccggttacctgacccgccgtctggtcgacgtcgtccag
gacgtcatcatcaccgagatcgattgcggcaccgtcgacggcctggagatcacccactac
gtcaaggccggcgacatcaagcagcgcgttcacgagcgcgccctgggccggacctgcatg
ttcgacgtctacgatccggtcaccgacgaggtcatcatcccgaccaacgcgctcattgac
gagcactacgcccaggtcatcgaagacaagggcttcagctcgctgatgatccgctcgacc
ctgacctgccagtccaaacacggcgtgtgcgccatgtgctacggccgcgacctggcccgg
ggacacctggtcaacgtcggcgagaccgtgggcatcatcgccgcccagtccatcggcgag
ccgggcacccagctcaccatgcgcaccttccacatcggcggcacggcggcgcgcgaaatc
gcccagtcgtcggtgacggcccagcacagcggtcgcatcgtgctctcgcgtgtcaagtcc
atcgtcaaccagcagggccacaccatcatgatgggcaagtccggccaggtgtcggtggtc
gacgaccagggccgcgagcgcgagcgctacagcctgccgtccggcgcgaaactctacgcc
gtggccggtcaggaagtgaaaaaggaccagctgctggccgaatgggacccgttcaacgaa
ccgtttgtcaccgacgtcgccggcgtgatcaagttcaccgacatcgtggaaggcaagacc
taccaggagaaggtggacgacgccaccaagcgcgccacgcagaccatcatcgaataccgc
accacttcgtaccgtccgtcggtctccatcgtggacgagcgcggcaatcccaagttccga
cccggcaccaacaccccggccatcttctccatgcccgtgggcgcgattctcatgctgcgc
gacggccaggaggtcttcgaaggcgacatcatcgcccgtaagccccgcgaatcgtccaag
accaaggacatcgtcggcggtctcccgcgcgtcgccgagctcttcgaagtccgcaagccc
aaggaaatggcggtcgtctcggaaattgacggcctggtctcctttggcccggaaaccaag
ggcaagcgcaagatcatcgtcacccccgaggctggcgatcccaaggaatacctcatcccg
cgcggcaagcacgtcacggtccaggaaggcgacttcgtggaggccggcgaactgctgacc
gaaggctacccggaattgcacgatatcctgaagatcaagggcgagaagttcctggccaag
taccttgtggacgaaatccaggacgtgtaccggttccagggcgtgggcatcaacgacaag
cacatcgaaatcatcgtgcgccagatgctgaaaaaggtctccatcctcgattctggcgag
accaacttcctcatcggcgagcaggtcgacaagatccgcttcatggaagagaacctccgg
gtcatggaagagggcctcaagcccgccatggccgaaccgctggtgctcggcatcacccag
gcctcgctgtccacggattcgttcatctcggcggcctccttccaggagaccaccaaggtg
ctcaccgaagcctcgctcatgggcaaggacgactccctgcggggacttaaggaaaacgtc
atcgtgggccggctcatcccggccggcaccggctaccgtcgctacatggacagcgaaatc
gccgtgccgcgccagcccgagcgccccgaccggttcctggaagagctggaagaaagcccc
atcgtcggcagcatcgatctcgactag
DBGET
integrated database retrieval system
