Solidesulfovibrio magneticus: DMR_32890
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Entry
DMR_32890 CDS
T00917
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dma
Solidesulfovibrio magneticus
Pathway
dma03410
Base excision repair
dma03430
Mismatch repair
dma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DMR_32890 (recJ)
03430 Mismatch repair
DMR_32890 (recJ)
03440 Homologous recombination
DMR_32890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dma03400
]
DMR_32890 (recJ)
DNA repair and recombination proteins [BR:
dma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DMR_32890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DMR_32890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DMR_32890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAH76780
UniProt:
C4XJN3
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All DBs
Position
3686202..3687902
Genome browser
AA seq
566 aa
AA seq
DB search
MPKKWIFPAPLADAGRIAAVADGLGVSQPIAALLATRGYDTAEAMDRYLSPGLRHLMRPA
DIPGLETAVGVIVRAVAAGQTLAIWGDYDVDGITGTALLLDFFRERGLSPLYRLPVRAEE
GYGLNIGGIEELAAAGAEVLITVDCGITAVAEVARAKELGLSVVVTDHHLPGEELPPADA
VVDPKLGDGPGNDLAGVGVAFFLAAALSRALPGDPGDVRRLLDLVALGTLADVVPLGGQN
RILAKNGMLLLAEARRPGVYALKEVAGQNPKATLGASQITFGLAPRINAAGRMGRPDAAL
ELLLAPDLETARPLAADLDAENTRRRAEEDAIQAEALRQAEAAPDHFGLTLFAPHWHQGV
IGIVASRVAEARYRPTLILTADPAKGRLKGSGRSIPECDLHGLLCDIADSLLAFGGHKQA
AGFSIDPDKLGEVSRRFNEAAAAALGHAVPTPSLRLDGELAFGEISSTLVRELALLEPFG
CGNPEPAFASPPVTVQARRAFGENHVALTLRDPAAGVTFKGKAWRMAAQIGQETAGRTVR
VAYSPKITYFSGIPEIELRLRDLGPA
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
ttgcccaagaaatggatattccccgcccccctggccgacgccggccgcatcgcggccgtg
gccgacggcctgggcgtgtcccagcccattgccgccctgctcgccacgcgcggctacgac
acggccgaggccatggaccgctacctgtcgccaggcctgcgccatctcatgcgtccggcc
gacatcccgggcctggaaacggccgtcggcgtcatcgtccgggccgtggccgccggccag
accctggccatctggggcgactacgacgtggacggcatcaccggcacggcgcttctgctc
gatttctttcgggagcgcggcctaagccccctttaccggctgccggtgcgggccgaggaa
ggctacggcctcaacatcggcggcatcgaggaactggccgcggccggggccgaggtgctc
atcaccgtggactgcggcatcaccgccgtggccgaggtggctcgggccaaggaactgggg
ctttcggtggtggtcaccgaccaccacctgccgggcgaggagctgccgccggccgacgcc
gtggtcgatcccaagctgggcgacggcccgggcaacgacctggccggagtcggggtggcc
tttttcctggccgccgccctcagccgcgccctgcccggcgaccccggcgacgtccgccgg
ctgcttgacctcgtggcgcttggcaccctggccgacgtggtgccccttggcggccaaaac
cgcattcttgccaaaaacggcatgttgcttttggccgaagcccgccggcccggcgtgtat
gccttaaaggaagtggccggccaaaatcccaaggcgacgcttggcgcgtcccagatcacc
ttcggcctggccccgcgcatcaacgccgccggccgcatgggccgacccgacgccgccctg
gagctgctcctggccccggacctggagaccgcccggcccctggccgccgacctcgacgcc
gaaaacacccgccgccgggccgaggaggacgccatccaggccgaggcgctacgtcaagcc
gaggccgccccggaccacttcggcctgacccttttcgccccccactggcaccagggcgtc
atcggcatcgtggcctcccgggtggccgaggcccgctaccggccaacgcttatcctcacg
gccgatccagccaagggccggctcaagggctcgggccgctccatcccggaatgcgacctg
cacggccttctctgcgacatcgccgacagcctgctcgctttcggcggccacaagcaagcg
gcaggattctccatagatcccgacaaacttggcgaggtgtcgcggcgcttcaacgaggcg
gcggcggcggccctgggccatgcggttccgacgccgagcctgcgcctggacggcgagctg
gcctttggcgaaatcagctccaccctggtgcgcgagttggccctgctcgagccctttggc
tgcggcaatcccgagccggcctttgcctcgccgccggtgacggtgcaagcccggcgggcc
tttggggaaaaccatgtggccctgaccctgcgcgatccggccgccggggtgacgtttaag
ggcaaggcctggcgcatggccgcccaaatcggccaggagacggccggccgcacagtgcgc
gtggcctattcgcccaagatcacctacttttccggcatcccggagatcgagctgcggctg
cgcgacctggggccggcctga
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