Solidesulfovibrio magneticus: DMR_39270
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Entry
DMR_39270 CDS
T00917
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dma
Solidesulfovibrio magneticus
Brite
KEGG Orthology (KO) [BR:
dma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dma03016
]
DMR_39270
Enzymes [BR:
dma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DMR_39270
Transfer RNA biogenesis [BR:
dma03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DMR_39270
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
BAH77418
NITE:
DMR_39270
UniProt:
C4XNB5
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All DBs
Position
complement(4452307..4452870)
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AA seq
187 aa
AA seq
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MPRLFVGIGLPPAHQAVAAGLVARLRPLACGPATWTRPDNAHLTLKFLGETDAARLPDIT
AALGRVAFAPFPLAVAGGGFFPSPSRPRVVWAGLAEGADSCRTLAAAVDAALARIGFAVE
ARPFAAHLTLGRLRDASRGCDVRGMLAVLGETVWPPATVEALTLYESTLGPQGPRYVALA
RFAGQEA
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgccccgtctttttgtcggcatcggcctgccgccggctcaccaggccgtggcggccgga
cttgtcgcgcgcctgcggccgctggcctgcggcccggccacctggacccggccggacaat
gcccatctgacgctcaagttcctgggcgagaccgatgccgcccggctgccggacatcact
gcggcccttggccgggtagcctttgcgccgtttcccctggccgtggccggcggcgggttt
ttcccgtccccgtcccggccccgggtggtatgggccgggctggccgaaggggccgactct
tgccggaccctggccgccgccgtggacgcggccctggcccggatcggcttcgccgtcgaa
gcccggccctttgccgcccatttgaccctggggcggcttcgcgacgcttcgcgcgggtgc
gatgtccgggggatgctggccgtgctgggcgaaaccgtctggccgccggcgacggtggag
gcgttgacgctctacgaatcgaccctcggtccccaggggccgcgctatgtcgcgttggcc
cgctttgccgggcaggaagcctag
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